GRIN-Global

RICE

Accession

IPR

Pedigree

Accession Citations

A N M Rubaiyath Bin Rahman and Jianhua Zhang. 2018. Preferential Geographic Distribution Pattern of Abiotic Stress Tolerant Rice. DOI: DOI 10.1186/s12284-018-0202-9. Note: institution: Outside IRRI Number of accession(s) cited: 13
A. K. Raymundo, A M Briones Jr, E Y Ardales, M T Perez, L C Fernandez, J E Leach, T W Mew, M A Ynalvez, C G McLaren and R J Nelson. 2007. Analysis of DNA Polymorphism and Virulence in Philippine Strains of Xanthomonas oryzae pv. Oryzicola. DOI: https://doi.org/10.1094/PDIS.1999.83.5.434. Note: institution: IRRI Number of accession(s) cited: 17
A.N. Kihupi, E.R. Angeles and G.S. Khush. 2001. Genetic analysis of resistance to bacterial blight, Xanthomonas oryzae pv. oryzae, in rice, Oryza sativa L.. DOI: https://doi.org/10.1023/A:1004004623439. Note: institution: IRRI Number of accession(s) cited: 40
Aditi Bhandari, J�r�me Bartholom�, Tuong-Vi Cao-Hamadoun, Nilima Kumari, Julien Frouin, Arvind Kumar and Nourollah Ahmadi. 2019. Selection of trait-specific markers and multi-environment models improve genomic predictive ability in rice. DOI: https://doi.org/10.1371/journal.pone.0208871. Note: institution: IRRI Number of accession(s) cited: 280
Aditi Bhandari, Nitika Sandhu, J�r�me Bartholome, Tuong-Vi Cao-Hamadoun, Nourollah Ahmadi, Nilima Kumari and Arvind Kumar. 2020. Genome-Wide Association Study for Yield and Yield Related Traits under Reproductive Stage Drought in a Diverse indica-aus Rice Panel. DOI: https://doi.org/10.1186/s12284-020-00406-3. Note: Couldn't find MTU 1010; institution: IRRI Number of accession(s) cited: 9
Ai Kitazumi, Isaiah C. M. Pabuayon, Hajime Ohyanagi, Masahiro Fujita, Bipush Osti, Matthew R. Shenton, Yusuke Kakei, Yasukazu Nakamura, Darshan S. Brar, Nori Kurata and Benildo G. de los Reyes. 2018. Potential of Oryza officinalis to augment the cold tolerance genetic mechanisms of Oryza sativa by network complementation. DOI: DOI:10.1038/s41598-018-34608-z. Note: institution: IRRI Number of accession(s) cited: 8
Alberto Casartelli, David Riewe, Hans Michael Hubberten, Thomas Altmann, Rainer Hoefgen and Sigrid Heuer. 2018. Exploring traditional aus-type rice for metabolites conferring drought tolerance. DOI: https://doi.org/10.1186/s12284-017-0189-7. Note: institution: Outside IRRI Number of accession(s) cited: 4
Amita B. Juliano, Ma. Elizabeth B. Naredo and M.T. Jackson. 1997. Taxonomic status of Oryza glumaepatula Steud. I. Comparative morphological studies of New World diploids and Asian AA genome species. DOI: https://doi.org/10.1023/A:1008682316449. Note: institution: IRRI Number of accession(s) cited: 65
Amita B. Juliano, Maria Elizabeth B. Naredo, Bao-Rong Lu and Michael T. Jackson. 2005. Genetic differentiation in Oryza meridionalis Ng based on molecular and crossability analyses. DOI: DOI:10.1007/s10722-005-2259-8. Note: institution: IRRI Number of accession(s) cited: 33
Ana L. Caicedo, Scott H. Williamson, Ryan D. Hernandez, Adam Boyko, Adi Fledel-Alon, Thomas L. York, Nicholas R. Polato, Kenneth M. Olsen, Rasmus Nielsen, Susan R. McCouch, Carlos D. Bustamante and Michael D. Purugganan. 2007. Genome-Wide Patterns of Nucleotide Polymorphism in Domesticated Rice. DOI: doi:10.1371/journal.pgen.0030163.eor. Note: institution: Outside IRRI Number of accession(s) cited: 59
Andrea Zuccolo, Jetty S. S. Ammiraju, HyeRan Kim, Abhijit Sanyal, Scott Jackson and Rod A. Wing. 2008. Rapid and Differential Proliferation of the Ty3-Gypsy LTR Retrotransposon Atlantys in the Genus Oryza. DOI: DOI 10.1007/s12284-008-9002-y. Note: institution: Outside IRRI Number of accession(s) cited: 11
Anthony J. Travis, Gareth J. Norton, Sutapa Datta, Ramendra Sarma, Tapash Dasgupta, Filipe L. Savio, Malcolm Macaulay, Peter E. Hedley, Kenneth L. McNally, Mahmud H. Sumon, M. Rafiqul Islam and Adam H. Price. 2015. Assessing the genetic diversity of rice originating from Bangladesh, Assam and West Bengal. DOI: https://doi.org/10.1186/s12284-015-0068-z. Note: institution: IRRI Number of accession(s) cited: 392
Arvinder Singh, Yogesh Kumar and N. K. Matta. 2018. Electrophoretic variation in seed proteins and interrelationships of species in the genus Oryza. DOI: doi.org/10.1007/s10722-018-0665-y. Note: institution: Outside IRRI Number of accession(s) cited: 18
B. Jyothi, B. Divya, L. V. Subba Rao, P. Laxmi Bhavani, P. Revathi, P. Raghuveer Rao, B. Rachana, G. Padmavathi, J. Aravind Kumar, C. Gireesh, M. S. Anantha, R. Abdul Fiyaz, C. Suvarna Rani and A. R. G. Ranganatha. 2018. New plant type trait characterization and development of core set among indica and tropical japonica genotypes of rice. DOI: https://doi.org/10.1017/S1479262118000084. Note: institution: Outside IRRI Number of accession(s) cited: 21
B. L. Hass, J. C. Pires, R. Porter, R. L. Phillips and S. A. Jackson. 2003. Comparative genetics at the gene and chromosome levels between rice (Oryza sativa) and wildrice (Zizania palustris). DOI: DOI 10.1007/s00122-003-1273-5. Note: institution: Outside IRRI Number of accession(s) cited: 4
B. P. M. Swamy, K. Kaladhar, K. Anuradha, Anil K. Batchu, T. Longvah and N. Sarla. 2018. QTL Analysis for Grain Iron and Zinc Concentrations in Two O. nivara Derived Backcross Populations. DOI: https://doi.org/10.1016/j.rsci.2018.06.003. Note: institution: IRRI Number of accession(s) cited: 2
B. P. Mallikarjuna Swamy, K. Kaladhar, N. Shobha Rani, G. S. V. Prasad, B. C. Viraktamath, G. Ashok Reddy, and N. Sarla. 2012. QTL Analysis for Grain Quality Traits in 2 BC2F2 Populations Derived from Crosses between Oryza sativa cv Swarna and 2 Accessions of O. nivara. DOI: https://doi.org/10.1093/jhered/esr145. Note: institution: IRRI Number of accession(s) cited: 2
B.J. Parsons, H.J. Newbury, M.T. Jackson and B.V. Ford-Lloyd. 1999. The genetic structure and conservation of aus, aman and boro rices from Bangladesh.. DOI: https://doi.org/10.1023/A:1008749532171. Note: institution: IRRI Number of accession(s) cited: 115
Balram Marathi, Joie Ramos, Sherry L. Hechanova, Rowena H. Oane and Kshirod K. Jena. 2014. SNP genotyping and characterization of pistil traits revealing a distinct phylogenetic relationship among the species of Oryza. DOI: DOI 10.1007/s10681-014-1213-2. Note: institution: IRRI Number of accession(s) cited: 43
Bao-Rong Lu, Ma. Elizabeth B. Naredo, Amita B. Juliano and Michael T. Jackson. 1998. Taxonomic status of Oryza glumaepatula Steud. III. Assessment of genomic affinity among AA genome species from the NewWorld, Asia, and Australia. DOI: https://doi.org/10.1023/A:1008686517357. Note: institution: IRRI Number of accession(s) cited: 25
Beatriz Andreo-Jimenez, Philippe Vandenkoornhuyse, Amandine L� Van, Arvid Heutinck1, Marie Duhamel, Niteen Kadam, Krishna Jagadish, Carolien Ruyter-Spira and Harro Bouwmeester. 2019. Plant host and drought shape the root associated fungal microbiota in rice. DOI: DOI 10.7717/peerj.7463. Note: Ten out of the 15 cultivars were selected to maximize the genetic variation using the SNP information available from a published study (Zhao et al., 2011). The five additional cultivars were selected based on their drought tolerance phenotype, and their information is available in IRGCIS database:; institution: IRRI Number of accession(s) cited: 15
Bernard O.Budot, Jaymee R. Encabo, Israel Dave V. Ambita, Genelou A. Atienza-Grande, Kouji Satoh, Hiroaki Kondoh, Victor J. Ulat, Ramil Mauleon, Shoshi Kikuchi and Il-Ryong Choi. 2014. Suppression of cell wall-related genes associated with stunting of Oryza glaberrima infected with Rice tungro spherical virus. DOI: https://doi.org/10.3389/fmicb.2014.00026. Note: institution: IRRI Number of accession(s) cited: 18
Beverley J. Parsons, H. John Newbury, Michael T. Jackson and Brian V. Ford-Lloyd. 1997. Contrasting genetic diversity relationships are revealed in rice (Oryza sativa L.) using different marker types. DOI: https://doi.org/10.1023/A:1009635721319. Note: institution: IRRI Number of accession(s) cited: 19
C. Bounphanousay, P. Jaisil, K.L. McNally, J. Sanitchon, N.R. Sackville Hamilton. 2008. Variation of Microsatellite Markers in a Collection of Lao's Black Glutinous Rice (Oryza sativa L.). DOI: DOI: 10.3923/ajps.2008.140.148. Note: institution: IRRI Number of accession(s) cited: 55
C. Martin, A. Juliano, H.J. Newbury, B-R. Lu, M.T. Jackson and B.V. Ford-Lloyd. 1996. The use of RAPD markers to facilitate the identification of Oryza species within a germplasm collection. DOI: https://doi.org/10.1023/A:1008678231467. Note: institution: IRRI Number of accession(s) cited: 92
C.-B. Li, D.-M. Zhang, S. Ge, B.-R. Lu and D.-Y. Hong. 2001. Identification of genome constitution of Oryza malampuzhaensis, O. minuta, and O. punctata by multicolor genomic in situ hybridization. DOI: https://doi.org/10.1007/s001220100563. Note: institution: IRRI Number of accession(s) cited: 8
Chitra Raghavan, Ma. Elizabeth B. Naredo, Hehe Wang, Genelou Atienza, Bin Liu, Fulin Qiu, Kenneth L. McNally and Hei Leung. 2006. Rapid method for detecting SNPs on agarose gels and its application in candidate gene mapping. DOI: https://doi.org/10.1007/s11032-006-9046-x. Note: institution: IRRI Number of accession(s) cited: 43
Chongrong Wang, Sheng Chen and Sibin Yu. 2010. Functional markers developed from multiple loci in GS3 for fine marker-assisted selection of grain length in rice. DOI: DOI 10.1007/s00122-010-1497-0. Note: institution: Outside IRRI Number of accession(s) cited: 65
Cong Shi, Wei Li, Qun-Jie Zhang, Yun Zhang, YanTong, Kui Li3, Yun-Long Liu and Li-ZhiGao. 1998. The draft genome sequence of an upland wild rice species, Oryza granulata. DOI: https://doi.org/10.1038/s41597-020-0470-2. Note: institution: Outside IRRI Number of accession(s) cited: 1
Courtney E. Jahn, John K. Mckay, Ramil Mauleon, Janice Stephens, Kenneth L. McNally, Daniel R. Bush, Hei Leung and Jan E. Leach. 2011. Genetic Variation in Biomass Traits among 20 Diverse Rice Varieties. DOI: DOI: 10.1104/pp.110.165654. Note: institution: IRRI Number of accession(s) cited: 19
Cuong D. Nguyen, Holden Verdeprado, Demeter Zita, Sachiyo Sanada-Morimura, Masaya Matsumura, Parminder S. Virk, Darshan S. Brar, Finbarr G. Horgan, Hideshi Yasui and Daisuke Fujita. 2019. The Development and Characterization of Near-Isogenic and Pyramided Lines Carrying Resistance Genes to Brown Planthopper with the Genetic Background of Japonica Rice (Oryza sativa L.). DOI: doi:10.3390/plants8110498. Note: institution: IRRI Number of accession(s) cited: 3
D.S. Kishor Jeonghwan Seo Joong Hyoun Chin Hee-Jong Koh. 2020. Evaluation of Whole-Genome Sequence, Genetic Diversity, and Agronomic Traits of Basmati Rice (Oryza sativa L.). DOI: https://doi.org/10.3389/fgene.2020.00086. Note: institution: Outside IRRI Number of accession(s) cited: 30
Daichi Kuniyoshi, Itaru Masuda, Yoshitaka Kanaoka, Yuki Shimazaki-Kishi, Yoshihiro Okamoto, Hideshi Yasui, Toshio Yamamoto, Kiyotaka Nagaki, Yoichiro Hoshino, Yohei Koide, Itsuro Takamure and Yuji Kishima. 2020. Diploid Male Gametes Circumvent Hybrid Sterility Between Asian and African Rice Species. DOI: https://doi.org/10.3389/fpls.2020.579305. Note: institution: Outside IRRI Number of accession(s) cited: 1
Dan Zhu, Houxiang Kang, Zhiqiang Li, Minghao Liu, Xiaoli Zhu, Yue Wang, Dan Wang, Zhilong Wang, Wende Liu and Guo-Liang Wang. 2016. A Genome-Wide Association Study of Field Resistance to Magnaporthe Oryzae in Rice. DOI: https://doi.org/10.1186/s12284-016-0116-3. Note: institution: Outside IRRI Number of accession(s) cited: 32
Dante L. Adorada, B. J. Stodart, C. Vera Cruz, G. Gregorio, I. Pangga, and G. J. Ash. 2012. Standardizing resistance screening to Pseudomonas fuscovaginae and evaluation of rice germplasm at seedling and adult plant growth stages. DOI: DOI 10.1007/s10681-012-0804-z. Note: institution: IRRI Number of accession(s) cited: 21
Diane R. Wang, Edward J. Wolfrum, Parminder Virk, Abdelbagi Ismail, Anthony J. Greenberg and Susan R. McCouch. 2016. Robust phenotyping strategies for evaluation of stem non-structural carbohydrates (NSC) in rice. DOI: doi:10.1093/jxb/erw375. Note: institution: IRRI Number of accession(s) cited: 2
E. M. Septiningsih, K. R. Trijatmiko, S. Moeljopawiro and S. R. McCouch. 2003. Identification of quantitative trait loci for grain quality in an advanced backcross population derived from the Oryza sativa variety IR64 and the wild relative O. rufipogon. DOI: https://doi.org/10.1007/s00122-003-1376-z. Note: institution: Outside IRRI Number of accession(s) cited: 1
Eug�nie H�brard, Agn�s Pinel-Galzi, Aderonke Oludare, Nils Poulicard, Jamel Aribi, Sandrine Fabre, Souley Issaka, C�dric Mariac, Alexis Dereeper, Laurence Albar, Drissa Silu� and Denis Fargette. 2018. Identification of a Hypervirulent Pathotype of Rice yellow mottle virus: A Threat to Genetic Resistance Deployment in West-Central Africa. DOI: https://doi.org/10.1094/PHYTO-05-17-0190-R. Note: institution: Outside IRRI Number of accession(s) cited: 3
Eung-Gi Jeong, Darshan S. Brar, Kyung-Ho Kang, Heung-Goo Hwang, Kshirod K. Jena, Ho-Yeong Kim, Sang-Nag Ahn, Gihwan Yi and Min-Hee Nam. 2005. Cytological Characterization of Interspecific Hybrids in Rice (Oryza sativa L.). Note: Couldn't find DOI; institution: IRRI Number of accession(s) cited: 4
F.R. NIAZI, I. DASGUPTA, J. SINGH, S. MATHUR and A. VARMA. 2004. Characterization of new strains in rice tungro Viruses. DOI: https://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.950.9800&rep=rep1&type=pdf. Note: couldn't find DOI; institution: Outside IRRI Number of accession(s) cited: 1
Fanmiao Wang, Toshisangba Longkumer, Sheryl C. Catausan, Carla Lenore F. Calumpang, Jeshurun A. Tarun, Jerome Cattin?Ortola, Takuma Ishizaki, Juan Pariasca Tanaka, Terry Rose, Matthias Wissuwa and Tobias Kretzschmar. 2018. Genome?wide association and gene validation studies for early root vigour to improve direct seeding of rice. DOI: DOI: 10.1111/pce.13400. Note: institution: IRRI Number of accession(s) cited: 307
Fengshan Liang, Qiyun Deng, Yueguang Wang, Yuedong Xiong, Demin Jin, Jiming Li and Bin Wang. 2004. Molecular marker-assisted selection for yield-enhancing genes in the progeny of �9311� O. rufipogon� using SSR. DOI: https://doi.org/10.1007/s10681-004-2560-1. Note: institution: Outside IRRI Number of accession(s) cited: 1
Finbarr G. Horgana, Maria-Liberty P. Almazan, Quynh Vu, Angelee Fame Ramal, Carmencita C. Bernal, Hideshi Yasui and Daisuke Fujita. 2018. Unanticipated benefits and potential ecological costs associated with pyramiding leafhopper resistance loci in rice. DOI: https://doi.org/10.1016/j.cropro.2018.09.013. Note: institution: IRRI Number of accession(s) cited: 2
Fiona R. Hay Rocel Valdez Jae-Sung Lee and Pompe C. Sta. Cruz. 2018. Seed longevity phenotyping: recommendations on research methodology. DOI: https://doi.org/10.1093/jxb/ery358. Note: institution: IRRI Number of accession(s) cited: 39
Fiona R. Hay, Flora de Guzman, David Ellis, Hazel Makahiya, Teresita Borromeo and N. Ruaraidh Sackville Hamilton. 2012. Viability of Oryza sativa L. seeds stored under genebank conditions for up to 30 years. DOI: DOI 10.1007/s10722-012-9833-7. Note: institution: IRRI Number of accession(s) cited: 78
Fiona R. Hay, Stephen Timple and Bert van Duijn. 2015. Can chlorophyll fluorescence be used to determine the optimal time to harvest rice seeds for long-term genebank storage?. DOI: DOI: 10.1017/S0960258515000082. Note: institution: IRRI Number of accession(s) cited: 20
G. Aluko, C. Martinez, J. Tohme, C. Castano, C. Bergman and J. H. Oard. 2004. QTL mapping of grain quality traits from the interspecific cross Oryza sativa � O. glaberrima. DOI: DOI 10.1007/s00122-004-1668-y. Note: institution: Outside IRRI Number of accession(s) cited: 1
G. C. Eizenga, H. A. Agrama, F. N. Lee and Y. Jia. 2008. Exploring genetic diversity and potential novel disease resistance genes in a collection of rice (Oryza spp.) wild relatives. DOI: https://doi.org/10.1007/s10722-008-9345-7. Note: institution: Outside IRRI Number of accession(s) cited: 28
G. Haritha, B.P.M. Swamy, M.L. Naik, B. Jyothi, B. Divya, S. Malathi and N. Sarla. 2018. Yield Traits and Associated Marker Segregation in Elite Introgression Lines Derived from O. sativa � O. nivara. DOI: https://doi.org/10.1016/j.rsci.2017.11.001. Note: institution: IRRI Number of accession(s) cited: 1
G. Haritha, B.P.M. Swamy, M.L. Naik, B. Jyothi, B. Divya, S. Malathi and N. Sarla. 2018. Yield Traits and Associated Marker Segregation in Elite Introgression Lines Derived from O. sativa � O. nivara. DOI: https://doi.org/10.1016/j.rsci.2017.11.001. Note: institution: IRRI Number of accession(s) cited: 1
G. Mohammadi-Nejad, A. Arzani, A. M. Rezai, R.K. Singh and G. B. Gregorio. 2008. Assessment of rice genotypes for salt tolerance using microsatellite markers associated with the saltol QTL. Note: Couldn't find DOI; institution: IRRI Number of accession(s) cited: 9
G. Ramkumar, G. D. Prahalada, Sherry Lou Hechanova, Ricky Vinarao and Kshirod K. Jena. 2015. Development and validation of SNP-based functional codominant markers for two major disease resistance genes in rice (O. sativa L.). DOI: DOI 10.1007/s11032-015-0323-4. Note: institution: IRRI Number of accession(s) cited: 260
G. Ramkumar, M. S. Madhav, S. J. S. Rama Devi, B. Makanth, M. K. Pandey, M. S. Prasad, R. M. Sundaram, B. C. Viraktamath and V. Ravindra Babu. 2016. Identification and validation of novel alleles of rice blast resistant gene Pi54, and analysis of their nucleotide diversity in landraces and wild Oryza species. DOI: https://doi.org/10.1007/s10681-016-1666-6. Note: institution: Outside IRRI Number of accession(s) cited: 103
Gandhimani Ramkumar, G.D. Prahalada, Sherry Lou Hechanova, Sung-Ryul Kim and Kshirod K. Jena. 2016. Exploring genetic diversity of rice cultivars for the presence of brown planthopper (BPH) resistance genes and development of SNP marker for Bph190. DOI: doi:10.1111/pbr.12365. Note: institution: IRRI Number of accession(s) cited: 260
Gareth J. Norton, Anthony J. Travis, Alex Douglas, Susan Fairley, Eduardo De Paiva Alves, Panthita Ruang-areerate, Ma. Elizabeth B. Naredo, Kenneth L. McNally, Mahmud Hossain, Md. Rafiqul Islam and Adam H. Price. 2018. Genome Wide Association Mapping of Grain and Straw Biomass Traits in the Rice Bengal and Assam Aus Panel (BAAP) Grown Under Alternate Wetting and Drying and Permanently Flooded Irrigation. DOI: https://doi.org/10.3389/fpls.2018.01223. Note: institution: IRRI Number of accession(s) cited: 48
Geoffrey Onaga, James Egdane, Richard Edema and Ismail Abdelbagi. 2013. Morphological and genetic diversity analysis of rice accessions (Oryza sativa L.) differing in iron toxicity tolerance. DOI: https://doi.org/10.1007/s12892-012-0104-0. Note: institution: IRRI Number of accession(s) cited: 7
George Thomas, Latha Joseph, George Varghese, K. Kalyanaraman, Philomena Kuriachan and M.R. Das. 2001. Discrimination between Oryza malampuzhaensis Krish. et Chand. and Oryza officinalis Wall ex Watt based on RAPD markers and morphological traits. DOI: https://doi.org/10.1023/A:1012602516236. Note: institution: Outside IRRI Number of accession(s) cited: 5
Gerbert Sylvestre Dossa, Ricardo Oliva, Edgar Maiss, Casiana Vera Cruz and Kerstin Wydra. 2017. High Temperature Enhances the Resistance of Cultivated African Rice, Oryza glaberrima, to Bacterial Blight. DOI: https://doi.org/10.1094/PDIS-05-15-0536-RE. Note: institution: IRRI Number of accession(s) cited: 16
Gui Xiao, Frances Nikki Borja, Ramil Mauleon, Jonas Padilla, Mary Jeanie Telebanco-Yanoria, Jianxia Yang, Guodong Lu, Maribel Dionisio-Sese and Bo Zhou. 2017. Identification of resistant germplasm containing novel resistance genes at or tightly linked to the Pi2/9 locus conferring broad-spectrum resistance against rice blast. DOI: https://doi 10.1186/s12284-017-0176-z. Note: institution: IRRI Number of accession(s) cited: 405
Gustave Djedatin, Marie-No�lle Ndjiondjop, Thierry Mathieu, Casiana M. Vera Cruz, Ambaliou Sanni, Alain Ghesqui�re and Val�rie Verdier. 2011. Evaluation of African Cultivated Rice Oryza glaberrima for Resistance to Bacterial Blight. DOI: doi:10.1094/PDIS-08-10-0558. Note: institution: IRRI Number of accession(s) cited: 2
H.H. Yan, G.Q. Liu, Z.K. Cheng, X.B. Li, G.Z. Liu and L.H. Zhu. 2002. A genome-specific repetitive DNA sequence from Oryza eichingeri: characterization, localization, and introgression to O. sativa. DOI: https://doi.org/10.1007/s001220100766. Note: institution: Outside IRRI Number of accession(s) cited: 12
Hei Leung, Chitra Raghavan, Bo Zhou, Ricardo Oliva, Il Ryong Choi, Vanica Lacorte, Mona Liza Jubay, Casiana Vera Cruz, Glenn Gregorio, Rakesh Kumar Singh, Victor Jun Ulat, Frances Nikki Borja, Ramil Mauleon, Nickolai N. Alexandrov, Kenneth L. McNally and Ruaraidh Sackville Hamilton. 2015. Allele mining and enhanced genetic recombination for rice breeding. DOI: DOI 10.1186/s12284-015-0069-y. Note: institution: IRRI Number of accession(s) cited: 2
HyunJung Kim, Eung Gi Jeong, Sang-Nag Ahn, Jeffrey Doyle, Namrata Singh, Anthony J Greenberg, Yong Jae Won and Susan R McCouch. 2014. Nuclear and chloroplast diversity and phenotypic distribution of rice (Oryza sativa L.) germplasm from the democratic people�s republic of Korea (DPRK; North Korea). DOI: https://doi.org/10.1186/s12284-014-0007-4. Note: institution: Outside IRRI Number of accession(s) cited: 1
HyunJung Kim, Janelle Jung, Namrata Singh, Anthony Greenberg, Jeff J. Doyle, Wricha Tyagi, Jong-Wook Chung, Jennifer Kimball, Ruaraidh Sackville Hamilton and Susan R. McCouch. 2016. Population Dynamics Among six Major Groups of the Oryza rufipogon Species Complex, Wild Relative of Cultivated Asian Rice. DOI: DOI 10.1186/s12284-016-0119-0. Note: institution: IRRI Number of accession(s) cited: 314
Ichiro Nakamura, Seiichi Murayama, Satoshi Tobita, Bui Ba Bong, Seiji Yanagihara, Yukio Islb.imine and Yoshinobu Kawamitsu. 2015. Effect of NaCI on the Photosynthesis, Water Relations and Free Proline Acculnulation in the Wild Oryza Species. DOI: https://doi.org/10.1626/pps.5.305. Note: institution: IRRI Number of accession(s) cited: 2
In�s S. Piresa, S�nia Negrao, M. Margarida Oliveira and Michael D. Purugganan. 2015. Comprehensive phenotypic analysis of rice (Oryza sativa) response to salinity stress. DOI: https://doi.org/10.1111/ppl.12356. Note: institution: Outside IRRI Number of accession(s) cited: 51
Issa Wonni, Gustave Djedatin, L�onard Ou�draogo and Val�rie Verdier. 2015. Evaluation of Rice Germplasm against Bacterial Leaf Streak Disease Reveals Sources of Resistance in African Varieties. DOI: http://dx.doi.org/10.4172/2157-7471.1000312. Note: institution: Outside IRRI Number of accession(s) cited: 2
J. Xu, S. V. Constantino, G. Magpantay, J. Bennett, S. Sarkarung and N. Huang. 1997. Classification of rice germplasm. II. Discrimination of indica from japonica via analysis of amplicon length polymorphisms. DOI: https://doi.org/10.1007/s002990050457. Note: institution: IRRI Number of accession(s) cited: 103
J. Zhu, M. D. Gale, S. Quarrie, M. T. Jackson and G. J. Bryan. 1997. AFLP markers for the study of rice biodiversity. DOI: https://doi.org/10.1007/s001220050778. Note: institution: IRRI Number of accession(s) cited: 57
Jae Young Choi, Maricris Zaidem, Rafal Gutaker, Katherine Dorph, Rakesh Kumar Singh and Michael D. Purugganan. 2019. The complex geography of domestication of the African rice Oryza glaberrima. DOI: https://doi.org/10.1371/journal.pgen.1007414. Note: institution: IRRI Number of accession(s) cited: 203
Jae Young Choi, Zoe N. Lye, Simon C. Groen, Xiaoguang Dai, Priyesh Rughani, Sophie Zaaijer, Eoghan D. Harrington, Sissel Juul and Michael D. Purugganan. 2020. Nanopore sequencing-based genome assembly and evolutionary genomics of circum-basmati rice. DOI: DOI 10.1186/s13059-020-1938-2. Note: institution: Outside IRRI Number of accession(s) cited: 2
Jae-Sung Lee, Jieun Kwak, Mi-Ra Yoon, Jeom-Sig Lee and Fiona R. Hay. 2017. Contrasting tocol ratios associated with seed longevity in rice variety groups. DOI: doi:10.1017/S0960258517000265. Note: institution: IRRI Number of accession(s) cited: 20
Jae-Sung Lee, Matthias Wissuwa, Oscar B. Zamora and Abdelbagi M. Ismail. 2018. Novel Sources of aus Rice for Zinc Deficiency Tolerance Identified Through Association Analysis Using High-Density SNP Array. DOI: https://doi.org/10.1016/j.rsci.2018.08.004. Note: institution: IRRI Number of accession(s) cited: 108
Jae-Sung Lee, Tobias Kretzschmar, Kenneth L. McNally, Abdel M. Ismail, Pompe C. Sta. Cruz, N. Ruaraidh Sackville Hamilton, Fiona R. Hay, Myrish Pacleb, Rocel Valdez and Marlina Velasco-Punzalan. 2019. Variation in seed longevity among diverse Indica rice varieties. DOI: doi: 10.1093/aob/mcz093. Note: institution: IRRI Number of accession(s) cited: 299
James Silva, Brian Scheffler, Yamid Sanabria, Christian De Guzman, Dominique Galam, Andrew Farmer, Jimmy Woodward, Gregory May and James Oard. 2011. Identification of candidate genes in rice for resistance to sheath blight disease by whole genome sequencing. DOI: DOI 10.1007/s00122-011-1687-4. Note: institution: Outside IRRI Number of accession(s) cited: 2
Jason P. Lond, Yu-Chung Chiang, Kuo-Hsiang Hung, Tzen-Yuh Chiang and Barbara A. Schaal. 2006. Phylogeography of Asian wild rice, Oryza rufipogon, reveals multiple independent domestications of cultivated rice, Oryza sativa. DOI: https://doi.org/10.1073/pnas.0603152103. Note: institution: Outside IRRI Number of accession(s) cited: 225
Jian Zhang, Kai Chen, Yunlong Pang, Shahzad Amir Naveed, Xiuqin Zhao, Xiaoqian Wang, Yun Wang, Michael Dingkuhn, Julie Pasuquin, Zhikang Li and Jianlong Xu. 2017. QTL mapping and candidate gene analysis of ferrous iron and zinc toxicity tolerance at seedling stage in rice by genome-wide association study. DOI: DOI 10.1186/s12864-017-4221-5. Note: institution: IRRI Number of accession(s) cited: 222
Jinbin Li, Yiding Sun, Hui Liu, Yanyan Wang, Yulin Jia and Minghui Xu. 2013. Genetic variation and evolution of the Pit blast resistance locus in rice. DOI: https://doi.org/10.1007/s10722-013-0051-8. Note: institution: Outside IRRI Number of accession(s) cited: 31
Jing Tan, Niranjan Baisakh, Norman Oliva, Vilas Parkhi, Mayank Rai, Lina Torrizo, Karabi Datta and Swapan K. Datta. 2005. The screening of rice germplasm, including those transgenic rice lines which accumulate b carotene in their polished seeds, for their carotenoid profile. DOI: https://doi.org/10.1111/j.1365-2621.2005.00971.x. Note: institution: IRRI Number of accession(s) cited: 74
Jinhua Xiao, Jiming Li, Silvana Grandillo, Sang Nag Ahn, Longping Yuan, Steven D. Tanksley and Susan R. McCouch. 1998. Identification of Trait-Improving Quantitative Trait Loci Alleles From a Wild Rice Relative, Oryza rufipogon. DOI: PMCID: PMC1460369 (DOI not cited). Note: institution: Outside IRRI Number of accession(s) cited: 1
John Damien Platten, James A Egdane and Abdelbagi M Ismail. 2013. Salinity tolerance, Na+ exclusion and allele mining of HKT1;5 in Oryza sativa and O. glaberrima: many sources, many genes, one mechanism?. DOI: doi:10.1186/1471-2229-13-32. Note: institution: IRRI Number of accession(s) cited: 186
John N. Ferguson, Lorna McAusland, Kellie E. Smith, Adam H. Price, Zoe A. Wilson and Erik H. Murchie. 2010. Rapid temperature responses of photosystem II ef?ciencyforecast genotypic variation in rice vegetative heat tolerance. DOI: https://doi.org/10.1111/tpj.14956. Note: institution: Outside IRRI Number of accession(s) cited: 2
Joie M. Ramos, Tomoyuki Furuta, Kanako Uehara, Niwa Chihiro, Rosalyn B. Angeles-Shim, Junghyun Shim, Darshan S. Brar, Motoyuki Ashikari and Kshirod K. Jena. 2016. Development of chromosome segment substitution lines (CSSLs) of Oryza longistaminata A. Chev. & R�hr in the background of the elite japonica rice cultivar, Taichung 65 and their evaluation for yield traits. DOI: https://doi.org/10.1007/s10681-016-1685-3. Note: institution: IRRI Number of accession(s) cited: 2
Jolly Chatterjee, Vivek Thakur, Robert Nepomuceno, Robert A. Coe, Jacqueline Dionora, Abigail Elmido-Mabilangan, Abraham Darius Llave, Anna Mae Delos Reyes, Apollo Neil Monroy, Irma Canicosa, Anindya Bandyopadhyay, Kshirod K. Jena, Darshan S. Brar and William Paul Quick. 2020. Natural Diversity in Stomatal Features of Cultivated and Wild Oryza Species. DOI: https://doi.org/10.1186/s12284-020-00417-0. Note: institution: IRRI Number of accession(s) cited: 21
Joong Hyoun Chin, Yoo-Jin Lee, Wenzhu Jiang, Hee-Jong Koh and Michael J. Thomson. 2016. Characterization of indica�japonica subspecies-specific InDel loci in wild relatives of rice (Oryza sativa L. subsp. indica Kato and subsp. japonica Kato). DOI: DOI 10.1007/s10722-016-0368-1. Note: institution: IRRI Number of accession(s) cited: 31
Joshua C. Stein, Yeisoo Yu, Dario Copetti, Derrick J. Zwick, Li Zhang, Chengjun Zhang, Kapeel Chougule, Dongying Gao, Aiko Iwata, Jose Luis Goicoechea, Sharon Wei, Jun Wang, Yi Liao, Muhua Wang, Julie Jacquemin, Claude Becker, Dave Kudrna and Jianwei . 2018. Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza. DOI: https://doi.org/10.1038/s41588-018-0040-0. Note: institution: IRRI Number of accession(s) cited: 6
Juan Pariasca-Tanaka, Mathias Lorieux, Chunlin He, Susan McCouch, Michael J. Thomson and Matthias Wissuwa. 2014. Development of a SNP genotyping panel for detecting polymorphisms in Oryza glaberrima/O. sativa interspecific crosses. DOI: DOI 10.1007/s10681-014-1183-4. Note: institution: IRRI Number of accession(s) cited: 7
K. C. Park, N. H. Kim, Y. S. Cho, K. H. Kang, J. K. Lee and N.-S. Kim. 2003. Genetic variations of AA genome Oryza species measured by MITE-AFLP. DOI: https://doi.org/10.1007/s00122-003-1252-x. Note: institution: Outside IRRI Number of accession(s) cited: 55
K. J. Whitehouse, F. R. Hay and R. H. Ellis. 2015. Increases in the longevity of desiccation-phase developing rice seeds: response to high temperature drying depends on harvest moisture content. DOI: doi:10.1093/aob/mcv091. Note: institution: IRRI Number of accession(s) cited: 20
K. N. Ta, H. Adam, Y. M. Staedler, J. Sch�nenberger, T. Harrop, J. Tregear, N. V. Do, P. Gantet, A. Ghesqui�re and S. Jouannic. 2017. Differences in meristem size and expression of branching genes are associated with variation in panicle phenotype in wild and domesticated African rice. DOI: DOI 10.1186/s13227-017-0065-y. Note: institution: Outside IRRI Number of accession(s) cited: 2
K. Nemoto, Y. Ukai, D.-Q. Tang, Y. Kasai and M. Morita. 2004. Inheritance of early elongation ability in floating rice revealed by diallel and QTL analyses. DOI: DOI 10.1007/s00122-004-1600-5. Note: institution: Outside IRRI Number of accession(s) cited: 3
K.J. Whitehouse, F.R. Hay and R.H. Ellis. 2018. Improvement in rice seed storage longevity from high-temperature drying is a consistent positive function of harvest moisture content above a critical value. DOI: https://doi.org/ 10.1017/S0960258518000211. Note: institution: IRRI Number of accession(s) cited: 20
Katherine J. Whitehouse, Fiona R. Hay and Richard H. Ellis. 2017. High-temperature stress during drying improves subsequent rice (Oryza sativa L.) seed longevity. DOI: doi:10.1017/S0960258517000277. Note: institution: IRRI Number of accession(s) cited: 1
Kenneth L. McNally, Kevin L. Childs, Regina Bohnert, Rebecca M. Davidson, Keyan Zhao, Victor J. Ulat, Georg Zeller, Richard M. Clark, Douglas R. Hoen, Thomas E. Bureau, Renee Stokowski, Dennis G. Ballinger, Kelly A. Frazer, David R. Cox, Badri Padhukasahasram, Carlos D. Bustamante, Detlef Weigel, David J. Mackill, Richard M. Bruskiewich, Gunnar Ratsch, C. Robin Buell, Hei Leung and Jan E. Leach. 2009. Genomewide SNP variation reveals relationships among landraces and modern varieties of rice. DOI: https://doi.org/10.1073/pnas.0900992106. Note: institution: IRRI Number of accession(s) cited: 11
Kenneth L. McNally, Richard Bruskiewich, David Mackill, C. Robin Buell, Jan E. Leach and Hei Leung. 2006. Sequencing Multiple and Diverse Rice Varieties. Connecting Whole-Genome Variation with Phenotypes. DOI: doi/10.1104/pp.106.077313. Note: institution: IRRI Number of accession(s) cited: 17
Khin Myo Myint, Brigitte Courtois, Ange-Marie Risterucci, Julien Frouin, Khin Soe, Khin Maung Thet, Apichart Vanavichit and Jean-Christophe Glaszmann. 2012. Specific patterns of genetic diversity among aromatic rice varieties in Myanmar. DOI: https://doi.org/10.1186/1939-8433-5-20. Note: institution: IRRI Number of accession(s) cited: 76
Khin Myo Myint, Siwaret Arikit, Samart Wanchana, Tadashi Yoshihashi, Kiattawee Choowongkomon and Apichart Vanavichit. 2012. A PCR-based marker for a locus conferring the aroma in Myanmar rice (Oryza sativa L.). DOI: DOI: 10.1007/s00122-012-1880-0. Note: institution: IRRI Number of accession(s) cited: 3
Kristie A. Mather, Jeanmaire Molina, Jonathan M. Flowers, Samara Rubinstein, Brad L. Rauh, Amy Lawton-Rauh, Ana L. Caicedo, Kenneth L. Mcnally and Michael D. Purugganan. 2010. Migration, isolation and hybridization in island crop populations: the case of Madagascar rice. DOI: doi: 10.1111/j.1365-294X.2010.04845.x. Note: institution: IRRI Number of accession(s) cited: 111
Kshirod K. Jena, Ma. LaRue E. Ballesfin and Ricky B. Vinarao. 2016. Development of Oryza sativa L. by Oryza punctata Kotschy ex Steud. monosomic addition lines with high value traits by interspecific hybridization. DOI: https://doi.org/10.1007/s00122-016-2745-8. Note: institution: IRRI Number of accession(s) cited: 1
Kuljit K. Cheema, Navjit K. Grewal, Yogesh Vikal, Rajiv Sharma, Jagjeet Lore, Aparna Das, Dharminder Bhatia, Ritu Mahajan, Vikas Gupta, Tajinder S. Bharaj, Kuldeep Singh . 2008. A novel bacterial blight resistance gene from Oryza nivara mapped to 38 kb region on chromosome 4L and transferred to Oryza sativa L. DOI: https://doi.org/10.1017/S0016672308009786. Note: institution: Outside IRRI Number of accession(s) cited: 1
Kumar Vasudevan, Casiana M. Vera Cruz, Wilhelm Gruissem and Navreet K. Bhullar. 2016. Geographically Distinct and Domain-Specific Sequence Variations in the Alleles of Rice Blast Resistance Gene Pib. DOI: doi: 10.3389/fpls.2016.00915. Note: institution: IRRI Number of accession(s) cited: 347
Kumari Neelam, Shiwali Thakur, Neha, Inderjit S. Yadav, Kishor Kumar, Salwinder S. Dhaliwal and Kuldeep Singh. 2017. Novel Alleles of Phosphorus-Starvation Tolerance 1 Gene (PSTOL1) from Oryza rufipogon Confers High Phosphorus Uptake Efficiency. DOI: https://doi.org/10.3389/fpls.2017.00509. Note: institution: Outside IRRI Number of accession(s) cited: 57
L. Joseph, P. Kuriachan and G. Thomas. 2007. Is Oryza malampuzhaensis Krish. et Chand. (Poaceae) a valid species? Evidence from morphological and molecular analyses. DOI: DOI 10.1007/s00606-007-0606-2. Note: institution: Outside IRRI Number of accession(s) cited: 14
L. Liu, R. Lafitte and D. Guan. 2004. Wild Oryza species as potential sources of drought-adaptive traits. DOI: https://doi.org/10.1023/B:EUPH.0000046801.27042.14. Note: institution: IRRI Number of accession(s) cited: 9
Lee, K. S., Rasabandith, S., Angeles, E. R., and Khush G. S. 2007. Inheritance of Resistance to Bacterial Blight in 21 Cultivars of Rice. DOI: https://doi.org/10.1094/PHYTO.2003.93.2.147. Note: institution: IRRI Number of accession(s) cited: 21
Liana G. Acevedo?Siaca, Robert Coe, Yu Wang, Johannes Kromdijk, W. Paul Quick and Stephen P. Long. 2020. Variation in photosynthetic induction between rice accessions and its potential for improving productivity.. DOI: doi: 10.1111/nph.16454. Note: institution: IRRI Number of accession(s) cited: 14
M. CHATURVEDI, ?. DATTA and P. K. K. NAIR. 2009. Pollen morphology of Oryza (Poaceae). DOI: DOI: 10.1080/00173139809362647. Note: institution: Outside IRRI Number of accession(s) cited: 16
M. E. B. NAREDO, AMIT A B. JULIANO, B. R. LU, FLORA DE GUZMAN and M. T. JACKSON. 1998. Responses to seed dormancy-breaking treatments in rice species (Oryza L.). DOI: https://mikejackson1948.files.wordpress.com/2015/07/64.pdf. Note: Couldn't find DOI; institution: IRRI Number of accession(s) cited: 17
M. Liakat Ali, Paul L. Sanchez, Si-bin Yu, Mathias Lorieux and Georgia C. Eizenga. 2000. Chromosome Segment Substitution Lines: A Powerful Tool for the Introgression of Valuable Genes from Oryza Wild Species into Cultivated Rice (O. sativa). DOI: DOI 10.1007/s12284-010-9058-3. Note: institution: Outside IRRI Number of accession(s) cited: 20
M.R. Islam, R.K. Singh, M.A. Salam, L. Hassan and G.B Gregorio. 2008. Molecular Diversity of Stress Tolerant Rice Genotypes using SSR Markers. Note: Couldn't find DOI; institution: IRRI Number of accession(s) cited: 6
Ma. Elizabeth B. Naredo, Amita B. Juliano, Bao Rong Lu and Michael T. Jackson. 1998. Taxonomic status of Oryza glumaepatula Steud. II. Hybridization between NewWorld diploids and AA genome species from Asia and Australia. DOI: https://doi.org/10.1023/A:1008634400519. Note: institution: IRRI Number of accession(s) cited: 20
Margaretha A. Veltman, Jonathan M. Flowers Tinde R. van Andel M. Eric Schranz. 2019. Origins and geographic diversification of African rice (Oryza glaberrima) . DOI: https://doi.org/ 10.1371/journal.pone.0203508. Note: institution: Outside IRRI Number of accession(s) cited: 102
Maria Celeste N. Banaticla-Hilario, Kenneth L. McNally, Ronald G. van den Berg and Nigel Ruaraidh Sackville Hamilton. 2013. Crossability patterns within and among Oryza series Sativae species from Asia and Australia. DOI: DOI 10.1007/s10722-013-9965-4. Note: institution: IRRI Number of accession(s) cited: 15
Maria Celeste N. Banaticla-Hilario, Ronald G. van den Berg, Nigel Ruaraidh Sackville Hamilton and Kenneth L. McNally. 2013. Local differentiation amidst extensive allele sharing in Oryza nivara and O. rufipogon. DOI: https://doi: 10.1002/ece3.689. Note: institution: IRRI Number of accession(s) cited: 125
Maria Elizabeth B. Naredo, Amita B. Juliano, Bao-Rong Lu and Michael T. Jackson. 2003. The taxonomic status of the wild rice species Oryza ridleyi Hook. f. and O. longiglumis Jansen (Ser. Ridleyanae Sharma et Shastry) from Southeast Asia. DOI: https://doi.org/10.1023/A:1023958130087. Note: institution: IRRI Number of accession(s) cited: 15
Maria Elizabeth Boncodin Naredo, Sheila Mae Quilloy Mercado, Maria Celeste Naynes Banaticla-Hilario, Myrricar Loren Berdos, Mario Alcantara Rodriguez, Kenneth Lee McNally and Ruaraidh Sackville Hamilton. 2016. Genetic diversity patterns in ex situ collections of Oryza officinalis Wall. ex G. Watt revealed by morphological and microsatellite markers. DOI: https://doi.org/10.1007/s10722-016-0396-x. Note: institution: IRRI Number of accession(s) cited: 71
Mayuri Munasinghe and Adam H. Price. 2016. Genetic and root phenotype diversity in Sri Lankan rice landraces may be related to drought resistance. DOI: DOI 10.1186/s12284-016-0092-7. Note: institution: Outside IRRI Number of accession(s) cited: 134
Md Kamal Hossain, Ong Shin Tze, Kalaivani Nadarajah, Kshirod Jena, Md Atiqur Rahman Bhuiyan and Wickneswari Ratnam. 2014. Identification and validation of sheath blight resistance in rice (Oryza sativa L.) cultivars against Rhizoctonia solani. DOI: DOI: 10.1080/07060661.2014.970577. Note: institution: IRRI Number of accession(s) cited: 4
Michael Adsetts Edberg Hansen, Fiona R. Hay and Jens Michael Carstensen. 2015. A virtual seed file: the use of multispectral image analysis in the management of genebank seed accessions. DOI: https://doi.org/10.1017/S1479262115000362. Note: institution: IRRI Number of accession(s) cited: 20
Michael J. Thomson, Endang M. Septiningsih, Fatimah Suwardjo, Tri J. Santoso, Tiur S. Silitonga and Susan R. McCouch. 2006. Genetic diversity analysis of traditional and improved Indonesian rice (Oryza sativa L.) germplasm using microsatellite markers. DOI: https://doi.org/10.1007/s00122-006-0457-1. Note: institution: IRRI Number of accession(s) cited: 3
Michael J. Thomson, Marjorie de Ocampo, James Egdane, M. Akhlasur Rahman, Andres Godwin Sajise, Dante L. Adorada, Ellen Tumimbang-Raiz, Eduardo Blumwald, Zeba I. Seraj, Rakesh K. Singh, Glenn B. Gregorio and Abdelbagi M. Ismail. 2010. Characterizing the Saltol Quantitative Trait Locus for Salinity Tolerance in Rice. DOI: DOI 10.1007/s12284-010-9053-8. Note: institution: IRRI Number of accession(s) cited: 7
Miriam D. Baltazar, John Carlos I. Ignacio, Michael J. Thomson, Abdelbagi M. Ismail, Merlyn S. Mendioro and Endang M. Septiningsih. 2019. QTL mapping for tolerance to anaerobic germination in rice from IR64 and the aus landrace Kharsu 80A. DOI: doi:10.1270/jsbbs.18159. Note: institution: IRRI Number of accession(s) cited: 1
Mohammad Rafiqul Islam, Glenn Borja Gregorio, Md. Abdus Salam, Bertrand C. Y. Collard, Rakesh Kumar Singh and Lutful Hassan. 2012. Validation of SalTol Linked Markers and Haplotype Diversity on Chromosome 1 of Rice. DOI: doi: 10.5376/mpb.2012.03.0010. Note: institution: IRRI Number of accession(s) cited: 6
Muhammad Ashfaq, Iqra Saleem, Muhammad Saleem Haider, Muhammad Ali, Javed Iqbal Watto, Muhammad Shafiq, Shahbaz Ahmad, Muhammad Asrar, Abdul Rasheed, Umair Ali, Muhammad Sajjad and Urooj Mubashar. 2020. SSR Based Screening of Rice Germplasm Against Blast Disease and its GIS Monitoring in Punjab, Pakistan. DOI: https://www.ijbbku.com/assets/custom/journals/2020/3/SSR%20BASED%20SCREENING%20OF%20RICE%20GERMPLASM%20AGAINST%20BLAST%20DISEASE%20AND%20ITS%20GIS%20MONITORING%20IN%20PUNJAB,%20PAKISTAN.pdf. Note: Couldn't find DOI; institution: Outside IRRI Number of accession(s) cited: 10
Muhua Wang Yeisoo Yu Georg Haberer Pradeep Reddy Marri Chuanzhu Fan Jose Luis Goicoechea Andrea Zuccolo Xiang Song Dave Kudrna Jetty S S Ammiraju Rosa Maria Cossu Carlos Maldonado Jinfeng Chen Seunghee Lee Nick Sisneros Kristi de Baynast Wolfgang Golser Marina Wissotski Woojin Kim Paul Sanchez Marie-Noelle Ndjiondjop Kayode Sanni Manyuan Long Judith Carney Olivier Panaud Thomas Wicker Carlos A Machado Mingsheng Chen Klaus F X Mayer Steve Rounsley Rod A Wing. 2014. The genome sequence of African rice (Oryza glaberrima) and evidence for independent domestication. DOI: doi:10.1038/ng.3044. Note: institution: Outside IRRI Number of accession(s) cited: 2
Nadia Al-Tamimi, Chris Brien, Helena Oakey, Bettina Berger, Stephanie Saade, Yung Shwen Ho, Sandra M. Schm�ckel, Mark Tester and S�nia Negr�o. 2016. Salinity tolerance loci revealed in rice using high-throughput non-invasive phenotyping. DOI: https://doi.org/10.1038/ncomms13342. Note: institution: Outside IRRI Number of accession(s) cited: 552
Nahuel Gonza�lez Schain, Ludovico Dreni, Lovely M.F. Lawas, Massimo Galbiati, Lucia Colombo, Sigrid Heuer, Krishna S.V. Jagadish and Martin M. Kater. 2015. Genome-Wide Transcriptome Analysis During Anthesis Reveals New Insights into the Molecular Basis of Heat Stress Responses in Tolerant and Sensitive Rice Varieties. DOI: DOI: 10.1093/pcp/pcv174. Note: institution: IRRI Number of accession(s) cited: 2
Namrata Singh, Trang T. M. Dang, Georgina V. Vergara, Dev Mani Pandey, Darlene Sanchez, C. N. Neeraja, Endang M. Septiningsih, Merlyn Mendioro, Evelyn Mae Tecson-Mendoza, Abdelbagi M. Ismail, David J. Mackill and Sigrid Heuer. 2010. Molecular marker survey and expression analyses of the rice submergence-tolerance gene SUB1A. DOI: DOI: 10.1007/s00122-010-1400-z. Note: institution: IRRI Number of accession(s) cited: 76
Nurul Hidayatun, Maria Genaleen Q. Diaz and Abdelbagi M. Ismail. 2017. Exploring Aluminum Tolerance at Seedling Stage in Rice (Oryza sativa, Linn) by Using Modified Magnavaca Nutrient Solution. DOI: DOI 10.21082/blpn.v23n2.2017.p81-90. Note: institution: IRRI Number of accession(s) cited: 7
O. Azzam, M. L. M. Yambao, M. Muhsin, K. L. McNally and K. M. L. Umadhay. 2000. Genetic diversity of rice tungro spherical virus in tungro-endemic provinces of the Philippines and Indonesia. DOI: https://doi.org/10.1007/s007050070118. Note: institution: IRRI Number of accession(s) cited: 4
O. Azzam, T. Imbe, R. Ikeda, P.D.Nath and E. Coloquio. 2001. Inheritance of resistance to rice tungro spherical virus in a near-isogenic line derived from Utri Merah and in rice cultivar TKM6. DOI: https://doi.org/10.1023/A:1012605218343. Note: institution: IRRI Number of accession(s) cited: 3
O. Souleymane, E. Nartey, B. Manneh, E. Danquah and K. Ofor. 2015. Phenotypic Variability of 20 Rice Genotypes Under Salt Stress. DOI: DOI: 10.3923/ijpbg.2016.45.51. Note: institution: Outside IRRI Number of accession(s) cited: 9
Olivier Cotsaftis, Darren Plett, Alexander A.T. Johnson, Harkamal Walia, Clyde Wilson, Abdelbagi M. Ismail, Timothy J. Close, Mark Tester and Ute Baumann. 2011. Root-Specific Transcript Profiling of Contrasting Rice Genotypes in Response to Salinity Stress. DOI: https://doi.org/10.1093/mp/ssq056. Note: institution: IRRI Number of accession(s) cited: 2
Onoriode Coast, Richard H. Ellis, Alistair J. Murdoch, Cherryl Qui�ones and Krishna S. V. Jagadish. 2014. High night temperature induces contrasting responses for spikelet fertility, spikelet tissue temperature, flowering characteristics and grain quality in rice. DOI: https://doi.org/10.1071/FP14104. Note: institution: IRRI Number of accession(s) cited: 7
P. Natraj Kumar, K. Sujatha, G. S. Laha, K. Srinivasa Rao, B. Mishra, B. C. Viraktamath, Y. Hari, C. S. Reddy, S. M. Balachandran, T. Ram, M. Sheshu Madhav, N. Shobha Rani, C. N. Neeraja, G. Ashok Reddy, H. Shaik, and R. M. Sundaram. 2012. Identification and fine-mapping of Xa33, a novel gene for resistance to Xanthomonas oryzae pv. Oryza. DOI: https://doi.org/10.1094/PHYTO-03-11-0075. Note: institution: Outside IRRI Number of accession(s) cited: 1
Padmini Swain, Mahender Anumalla, Smita Prusty, Bishnu Charan Marndi and Gundimeda Jwala Narasimha Rao. 2014. Characterization of some Indian native land race rice accessions for drought tolerance at seedling stage. DOI: https://search.informit.org/doi/10.3316/INFORMIT.210804620449882. Note: institution: IRRI Number of accession(s) cited: 73
Parminder S. Virk, Bian V. Ford-Lloyd, Michael T. Jackson, Harpal S. Pooni, Tomas P. Clemenot and H. John Newbury. 1995. Predicting quantitative variation within rice germplasm using molecular markers. DOI: https://doi.org/10.1038/hdy.1996.43. Note: institution: IRRI Number of accession(s) cited: 48
Parminder S. Virk, Brian V. Ford-Lloyd, Michael T. Jackson and H. John Newbury. 1994. Use of RAPD for the study of diversity within plant germplasm collections. DOI: https://doi.org/10.1038/hdy.1995.25. Note: institution: IRRI Number of accession(s) cited: 14
Parviz Fasahati, Sadequr Rahman and Wickneswari Ratnam. 2014. Genetic controls on starch amylose content in wheat and rice grains. DOI: https://doi.org/10.1007/s12041-014-0325-8. Note: institution: Outside IRRI Number of accession(s) cited: 3
Paul Tanger, Stephen Klassen, Julius P. Mojica, John T. Lovell, Brook T. Moyers, Marietta Baraoidan, Maria Elizabeth B. Naredo, Kenneth L. McNally, Jesse Poland, Daniel R. Bush, Hei Leung, Jan E. Leach and John K. McKay. 2017. Field-based high throughput phenotyping rapidly identifies genomic regions controlling yield components in rice. DOI: https://doi.org/10.1038/srep42839. Note: institution: IRRI Number of accession(s) cited: 2
Pradeep Reddy Marri, Sarla N, Laxminarayana V Reddy and EA Siddiq. 2005. Identification and mapping of yield and yield related QTLs from an Indian accession of Oryza rufipogon. DOI: doi:10.1186/1471-2156-6-33. Note: institution: Outside IRRI Number of accession(s) cited: 1
Preetinder S. Sarao, Gurpreet K. Sahi, Kumari Neelam, Gurjit S. Mangat, Bhaskar C. Patra and Kuldeep Singh. 2016. Donors for Resistance to Brown Planthopper Nilaparvata lugens (St�l) from Wild Rice Species. DOI: https://doi.org/10.1016/j.rsci.2016.06.005. Note: institution: Outside IRRI Number of accession(s) cited: 29
Puneet Paul, Balpreet K. Dhatt, Jaspreet Sandhu, Waseem Hussain, Larissa Irvin, Gota Morota, Paul Staswick and Harkamal Walia. 2019. Divergent phenotypic response of rice accessions to transient heat stress during early seed development. DOI: https://doi.org/10.1002/pld3.196. Note: Nine rice accessions from Rice Diversity Panel 1 (RDP1; Zhao et al., 2011) were selected based on their relatively similar flowering time (<120 days) to ensure that the accessions flowered under similar light conditions in the glasshouse; institution: IRRI Number of accession(s) cited: 9
R. K. Aggarwal, D. S. Brar and G. S. Khush. 1997. Two new genomes in the Oryza complex identified on the basis of molecular divergence analysis using total genomic DNA hybridization. DOI: https://doi.org/10.1007/s004380050384. Note: institution: IRRI Number of accession(s) cited: 77
R. K. Aggarwal, D. S. Brar and S. Nandi. 1999. Phylogenetic relationships among Oryza species revealed by AFLP markers. DOI: https://doi.org/10.1007/s001220051198. Note: institution: IRRI Number of accession(s) cited: 74
R. Latha, L. Rubia, J. Bennett and M. S. Swaminathan. 2004. Allele Mining for Stress Tolerance Genes in Oryza Species and Related Germplasm. DOI: https://doi.org/10.1385/mb:27:2:101. Note: institution: IRRI Number of accession(s) cited: 48
Rachana B, Eswari KB, Jyothi B, Lakshmi Devi G, Jai Vidhya LRK, Laxmi Bhavani P, Bharath M, Raghuveer Rao P, Aravind Kumar J, Fiyaz Abdul R, Neeraja CN, Subba Rao LV and T Ram. 2019. Characterization of new plant type core set of rice (Oryza sativa L.) using QTL/gene-linked markers. DOI: DOI:10.35709/ory.2019.56.4.2. Note: institution: Outside IRRI Number of accession(s) cited: 33
Rachana Bagudam, K. B. Eswari, Jyothi Badri, G. Lakshmi Devi, L. R. K. JaiVidhya, P. Bhavani, Gattu Swathi, M. Bharath, P. Raghuveer Rao, Jukanti Aravind Kumar, R. Abdul Fiyaz, C. N. Neeraja, L. V. Subba Rao and T. Ram. 2020. Morphological and molecular characterization of new plant type core set for yield and culm strength traits in rice (Oryza sativa L.). DOI: https://doi.org/10.1007/s13562-020-00581-w. Note: institution: Outside IRRI Number of accession(s) cited: 34
Railson Schreinert dos Santos, Daniel da Rosa Farias, Camila Pegoraro, Cesar Valmor Rombaldi, Takeshi Fukao, Rod A. Wing and Antonio Costa de Oliveira. 2017. Evolutionary analysis of the SUB1 locus across the Oryza genomes. DOI: https://doi.org/10.1186/s12284-016-0140-3. Note: institution: Outside IRRI Number of accession(s) cited: 7
Raj Kumar Niroula, Chiara Pucciariello, Viet The Ho, Giacomo Novi, Takeshi Fukao and Pierdomenico Perata. 2012. SUB1A?dependent and ?independent mechanisms are involved in the flooding tolerance of wild rice species. DOI: https://doi.org/10.1111/j.1365-313X.2012.05078.x. Note: institution: Outside IRRI Number of accession(s) cited: 37
Raju Bheemanahalli, Sherry Hechanova, Jena K. Kshirod and S. V. Krishna Jagadish. 2019. Root anatomical traits of wild-rices reveal links between flooded rice and dryland sorghum. DOI: https://doi.org/10.1007/s40502-019-00451-1. Note: institution: IRRI Number of accession(s) cited: 23
Ratna Karan, Teresa DeLeon, Hanamareddy Biradar and Prasanta K. Subudhi. 2012. Salt Stress Induced Variation in DNA Methylation Pattern and Its Influence on Gene Expression in Contrasting Rice Genotypes. DOI: doi:10.1371/journal.pone.0040203. Note: institution: Outside IRRI Number of accession(s) cited: 3
Reza Mohammadi, Merlys S. Mendioro, Genaleen Q. Diaz, Glenn B. Gregorio and Rakesh K. Singh. 2014. Genetic analysis of salt tolerance at seedling and reproductive stages in rice (Oryza sativa). DOI: doi:10.1111/pbr.12210. Note: institution: IRRI Number of accession(s) cited: 1
Romain Philippe, Brigitte Courtois, Kenneth L. McNally, Pierre Mournet, Redouane El-Malki, Marie Christine Le Paslier, Denis Fabre, Claire Billot, Dominique Brunel, Jean-Christophe Glaszmann and Dominique This. 2010. Structure, allelic diversity and selection of Asr genes, candidate for drought tolerance, in Oryza sativa L. and wild relatives. DOI: https://doi:10.1007/s00122-010-1348-z. Note: institution: IRRI Number of accession(s) cited: 212
Rosa Paula Cuevasa, Robert G. Gilbert and Melissa A. Fitzgeralda. 2010. Structural differences between hot-water-soluble and hot-water-insoluble fractions of starch in waxy rice (Oryza sativa L.). DOI: https://doi.org/10.1016/j.carbpol.2010.03.007. Note: institution: IRRI Number of accession(s) cited: 6
Rosa Paula O. Cuevas, Cyril John Domingo and Nese Sreenivasulu. 2018. Multivariate-based classification of predicting cooking quality ideotypes in rice (Oryza sativa L.) indica germplasm. DOI: https://doi.org/10.1186/s12284-018-0245-y. Note: institution: IRRI Number of accession(s) cited: 167
Rosalyn B. Angeles-Shim, Junghyun Shim, Ricky B. Vinarao, Ruby S. Lapis and Joshua J. Singleton. 2020. A novel locus from the wild allotetraploid rice species Oryza latifolia Desv. confers bacterial blight (Xanthomonas oryzae pv. oryzae) resistance in rice (O. sativa). DOI: https://doi.org/ 10.1371/journal.pone.0229155. Note: institution: IRRI Number of accession(s) cited: 1
Samsad Razzaque, Taslima Haque, Sabrina M. Elias, Md. Sazzadur Rahman, Sudip Biswas, Scott Schwartz, Abdelbagi M. Ismail, Harkamal Walia, Thomas E. Juenger and Zeba I. Seraj. 2017. Reproductive stage physiological and transcriptional responses to salinity stress in reciprocal populations derived from tolerant (Horkuch) and susceptible (IR29) rice. DOI: https://doi.org/10.1038/srep46138. Note: institution: IRRI Number of accession(s) cited: 2
Sancho G. Bon, Teresita H. Borromeo, Nestor C. Altoveros and Avelino D. Raymundo. 2006. Isozyme Characterization and Diversity Among the Philippine Populations of Oryza officinalis Wall ex. Watt conserved ex situ. DOI: https://philjournalsci.dost.gov.ph/images/pdf/pjs_pdf/vol135no2/pdf/Isozyme_characterization_and_diversity_among_the_Philippine_populations_of_Oryza_officinalis.pdf. Note: Couldn't find DOI; institution: Outside IRRI Number of accession(s) cited: 32
Seif Gasim, Ishraka Abuanja and Abdel-Wahab Abdalla. 2018. Genetic diversity of rice (Oryza sativa L.) accessions collected from Sudan and IRRI using SSR markers. DOI: DOI: 10.5897/AJAR2018.13554. Note: 13 accns were mentioned but only 6 accns were idetified through GRIMS. There's only one record of Mazhan on GRIMS, but the word RED is not included (IRGC 97028). IRGC 122403 (IRRI 154). IRGC 15800 (ERATIO). IRGC 49592 (DAWE). IRGC 88335 ( KHAO HLAN ON). IRGC 135888 (FL 478).; institution: Outside IRRI Number of accession(s) cited: 6
Shahid Masood Shah, Muhammad Arif, Kashif Aslam, Ghulam Shabir and Michael J. Thomson. 2015. Genetic diversity analysis of Pakistan rice (Oryza sativa) germplasm using multiplexed single nucleotide polymorphism markers. DOI: DOI 10.1007/s10722-015-0304-9. Note: institution: IRRI Number of accession(s) cited: 2
Sherry Lou Hechanova, Manas R. Prusty, Sung?Ryul Kim, LaRue Ballesfin, Joie Ramos, G. D. Prahalada and Kshirod K. Jena. 2018. Monosomic alien addition lines (MAALs) of Oryza rhizomatis in Oryza sativa: production, cytology, alien trait introgression, molecular analysis and breeding application. DOI: https://doi.org/10.1007/s00122-018-3147-x. Note: institution: IRRI Number of accession(s) cited: 1
S�nia Negr�o, M. Cec�lia Almadanim, In�s S. Pires, Isabel A. Abreu, Jo�o Maroco, Brigitte Courtois, Glenn B. Gregorio, Kenneth L. McNally and M. Margarida Oliveira. 2012. New allelic variants found in key rice salt?tolerance genes: an association study. DOI: https://doi.org/10.1111/pbi.12010. Note: institution: IRRI Number of accession(s) cited: 381
Srinivasachary, G. Beligan, L. Willocquet and S. Savary. 2013. A strategy to identify sources of quantitative resistance in pathosystems involving disease escape and physiological resistance: the case study of rice sheath blight. DOI: Doi: 10.1111/j.1365-3059.2012.02695.x. Note: institution: IRRI Number of accession(s) cited: 157
Sriprapai Chakhonkaen, Keasinee Pitnjam, Wachira Saisuk, Kittipat Ukoskit and Amorntip Muangprom. 2012. Genetic structure of Thai rice and rice accessions obtained from the International Rice Research Institute. DOI: https://doi.org/10.1186/1939-8433-5-19. Note: institution: Outside IRRI Number of accession(s) cited: 55
Stefan Reuscher, Tomoyuki Furuta, Kanako Bessho-Uehara, Michele Cosi, Kshirod K. Jena, Atsushi Toyoda, Asao Fujiyama, Nori Kurata and Motoyuki Ashikari. 2018. Assembling the genome of the African wild rice Oryza longistaminata by exploiting synteny in closely related Oryza species. DOI: DOI: 10.1038/s42003-018-0171-y. Note: institution: IRRI Number of accession(s) cited: 1
Stephen E. Timple and Fiona R. Hay. 2018. High-temperature drying of seeds of wild Oryza species intended for long-term storage. DOI: https://doi.org/10.15258/sst.2018.46.1.10. Note: institution: IRRI Number of accession(s) cited: 4
Stephen E. Timple, Fiona R. Hay, Ma. Fatima O. Mercado, Teresita H. Borromeo and Pompe C. Sta. Cruz. 2018. Response of intact seeds of wild rice (Oryza) species to dry heat treatment and dormancy-breaking chemicals. DOI: https://doi.org/10.15258/sst.2018.46.1.16. Note: institution: IRRI Number of accession(s) cited: 15
Suk-Man Kim and Russell F. Reinke. 2019. A novel resistance gene for bacterial blight in rice, Xa43(t) identified by GWAS, confirmed by QTL mapping using a bi-parental population. DOI: https://doi.org/10.1371/journal. pone.0211775. Note: institution: IRRI Number of accession(s) cited: 1
Susan R. McCouch, Megan Sweeney, Jiming Li, Hui Jiang, Michael Thomson, Endang Septiningsih, Jeremy Edwards, Pilar Moncada, Jinhua Xiao, Amanda Garris, Tom Tai, Cesar Martinez, Joe Tohme, Sugiono, Anna McClung, Long Ping Yuan and Sang-Nag Ahn. 2006. Through the genetic bottleneck: O. rufipogon as a source of trait-enhancing alleles for O. sativa. DOI: DOI 10.1007/s10681-006-9210-8. Note: institution: IRRI Number of accession(s) cited: 1
Syed Mehar Ali Shah, Hidayat-Ur-Rahman, Fida Muhammad Abbasi, Malik Ashiq Rabbani, Ijaz Ahmad Khan, Zabta Khan Shinwari and Zahir Shah. 2015. Interspecific Variation of Total Seed Protein in Wild Rice Germplasm Using SDS-PAGE. DOI: https://www.researchgate.net/publication/272828365_Interspecific_variation_of_total_seed_protein_in_wild_rice_germplasm_using_SDS-PAGE. Note: institution: Outside IRRI Number of accession(s) cited: 14
Teresa B. De Leon, Steven Linscombe, Glenn Gregorio and Prasanta K. Subudhi. 2015. Genetic variation in Southern USA rice genotypes for seedling salinity tolerance. DOI: doi: 10.3389/fpls.2015.00374. Note: institution: IRRI Number of accession(s) cited: 9
Teresita H. Borromeo. 2000. Philippine Wild Rices: Diverse and Disappearing. DOI: https://www.researchgate.net/publication/297192710_Philippine_wild_rices_Diverse_and_disappearing. Note: Couldn't find DOI; institution: Outside IRRI Number of accession(s) cited: 40
Thomas Degenkolbe, Phuc Thi Do, Ellen Zuther, Dirk Repsilber, Dirk Walther, Dirk K. Hincha and Karin I. Kohl. 2008. Expression profiling of rice cultivars differing in their tolerance to long-term drought stress. DOI: DOI 10.1007/s11103-008-9412-7. Note: institution: Outside IRRI Number of accession(s) cited: 3
Tomoyuki Furuta, Motoyuki Ashikari, Kshirod K. Jena, Kazuyuki Doi and Stefan Reuscher. 2017. Adapting genotyping-by-sequencing for rice F2 populations. DOI: https://doi.org/10.1534/g3.116.038190. Note: institution: IRRI Number of accession(s) cited: 1
Victoria C. Lapitan, Edilberto D. Redo�a, Toshinori Abe, and Darshan S. Brar. 2009. Mapping of Quantitative Trait Loci Using a Doubled-Haploid Population from the Cross of Indica and Japonica Cultivars of Rice. DOI: DOI: 10.2135/cropsci2008.11.0655. Note: institution: IRRI Number of accession(s) cited: 2
Vishnu Varthini Nachimuthu, Raveendran Muthurajan, Sudhakar Duraialaguraja, Rajeswari Sivakami, Balaji Aravindhan Pandian, Govinthraj Ponniah, Karthika Gunasekaran, Manonmani Swaminathan, Suji K K and Robin Sabariappan. 2015. Analysis of Population Structure and Genetic Diversity in Rice Germplasm Using SSR Markers: An Initiative Towards Association Mapping of Agronomic Traits in Oryza Sativa. DOI: DOI 10.1186/s12284-015-0062-5. Note: institution: IRRI Number of accession(s) cited: 22
Wei Qian, Song Ge and De-yuan Hong. 2004. Genetic diversity in accessions of wild rice Oryza granulata from South and Southeast Asia. DOI: DOI 10.1007/s10722-004-6691-y. Note: institution: Outside IRRI Number of accession(s) cited: 19
Xianjin Qiu, Yunlong Pang, Zhihua Yuan, Danying Xing, Jianlong Xu, Michael Dingkuhn, Zhikang Li and Guoyou Ye. 2015. Genome-Wide Association Study of Grain Appearance and Milling Quality in a Worldwide Collection of Indica Rice Germplasm. DOI: https://doi.org/10.1371/journal.pone.0145577. Note: institution: IRRI Number of accession(s) cited: 272
Xinyou Yin, Martin J. Kropff and Jan Goudriaan. 1996. Differential Effects of Day and Night Temperature on Development to Flowering in Rice. DOI: https://doi.org/10.1006/anbo.1996.0024. Note: institution: IRRI Number of accession(s) cited: 19
Y. Gong, T. Borromeo and B.-R. Lu. 2000. A biosystematic study of the Oryza meyeriana complex (Poaceae). DOI: http://dx.doi.org/10.1007/BF00986339. Note: institution: IRRI Number of accession(s) cited: 4
Yang Wang, Weihua Jiang, Hongmei Liu, Ya Zeng, Bo Du, Lili Zhu, Guangcun He and Rongzhi Chen. 2017. Marker assisted pyramiding of Bph6 and Bph9 into elite restorer line 93�11 and development of functional marker for Bph9. DOI: DOI 10.1186/s12284-017-0194-x. Note: institution: Outside IRRI Number of accession(s) cited: 5
Yibo Li, Chuchuan Fan, Yongzhong Xing, Yunhe Jiang, Lijun Luo, Liang Sun, Di Shao, Chunjue Xu, Xianghua Li, Jinghua Xiao, Yuqing He amd Qifa Zhang. 2011. Natural variation in GS5 plays an important role in regulating grain size and yield in rice. DOI: doi:10.1038/ng.977. Note: institution: Outside IRRI Number of accession(s) cited: 1
Yibo Li, Chuchuan Fan, Yongzhong Xing, Yunhe Jiang, Lijun Luo, Liang Sun, Di Shao, Chunjue Xu, Xianghua Li, Jinghua Xiao, Yuqing He and Qifa Zhang. 2011. Natural variation in GS5 plays an important role in regulating grain size and yield in rice. DOI: doi:10.1038/ng.977. Note: institution: Outside IRRI Number of accession(s) cited: 14
Yong Zhou, Dmytro Chebotarov, Dave Kudrna, Victor Llaca, Seunghee Lee, Shanmugam Rajasekar, Nahed Mohammed, Noor Al-Bader, Chandler Sobel-Sorenson, Praveena Parakkal, Lady Johanna Arbelaez, Natalia Franco, Nickolai Alexandrov, N. Ruaraidh Sackville Hamilton, Hei Leung, Ramil Mauleon, Mathias Lorieux, Andrea Zuccolo, Kenneth McNally, Jianwei Zhang and Rod A. Wing. 2020. A platinum standard pan-genome resource that represents the population structure of Asian rice. DOI: https://doi.org/10.1038/s41597-020-0438-2. Note: institution: IRRI Number of accession(s) cited: 10
Yoo-Jin Lee, Michael J. Thomson and Joong Hyoun Chin. 2014. Application of indica�japonica singlenucleotide polymorphism markers for diversity analysis of Oryza AA genome species. DOI: doi:10.1017/S1479262114000215. Note: institution: IRRI Number of accession(s) cited: 82
Yoshitaka Kanaoka, Daichi Kuniyoshi, Eri Inada, Yohei Koide, Yoshihiro Okamoto, Hideshi Yasui and Yuji Kishima. 2018. Anther culture in rice proportionally rescues microspores according to gametophytic gene efect and enhances genetic study of hybrid sterility. DOI: https://doi.org/10.1186/s13007-018-0370-z. Note: institution: Outside IRRI Number of accession(s) cited: 2
Yuji Shibata, Rogelio C. Cabunagan, Pepito Q. Cabauatan and Il-Ryong Choi. 2007. Characterization of Oryza rufipogon�Derived Resistance to Tungro Disease in Rice. DOI: DOI: 10.1094/PDIS-91-11-1386. Note: institution: IRRI Number of accession(s) cited: 1
Yunbi Xu, Dominique This, Roman C. Pausch, Wendy M. Vonhof, Jason R. Coburn, Jonathan P. Comstock and Susan R. McCouch. 2009. Leaf-level water use efficiency determined by carbon isotope discrimination in rice seedlings: genetic variation associated with population structure and QTL mapping.. DOI: https://doi.org/10.1007/s00122-009-0963-z. Note: institution: Outside IRRI Number of accession(s) cited: 64
Yusaku Uga, Yoshimichi Fukuta, Ryo Ohsawa and Tatsuhito Fujimura. 2003. Variations of Floral Traits in Asian Cultivated Rice (Oryza sativa L.) and its Wild Relatives (O. rufipogon Griff). DOI: https://doi.org/10.1270/jsbbs.53.345. Note: institution: IRRI Number of accession(s) cited: 179
Z.W. Ranga, S.V.K. Jagadish, Q.M. Zhou, P.Q. Craufurd and S. Heuer. 2011. Effect of high temperature and water stress on pollen germination and spikelet fertility in rice. DOI: https://doi.org/10.1016/j.envexpbot.2010.08.009. Note: institution: IRRI Number of accession(s) cited: 5

IPR Citations

A N M Rubaiyath Bin Rahman and Jianhua Zhang. 2018. Preferential Geographic Distribution Pattern of Abiotic Stress Tolerant Rice. DOI: DOI 10.1186/s12284-018-0202-9. Note: institution: Outside IRRI Number of accession(s) cited: 13
A. K. Raymundo, A M Briones Jr, E Y Ardales, M T Perez, L C Fernandez, J E Leach, T W Mew, M A Ynalvez, C G McLaren and R J Nelson. 2007. Analysis of DNA Polymorphism and Virulence in Philippine Strains of Xanthomonas oryzae pv. Oryzicola. DOI: https://doi.org/10.1094/PDIS.1999.83.5.434. Note: institution: IRRI Number of accession(s) cited: 17
A.N. Kihupi, E.R. Angeles and G.S. Khush. 2001. Genetic analysis of resistance to bacterial blight, Xanthomonas oryzae pv. oryzae, in rice, Oryza sativa L.. DOI: https://doi.org/10.1023/A:1004004623439. Note: institution: IRRI Number of accession(s) cited: 40
Aditi Bhandari, J�r�me Bartholom�, Tuong-Vi Cao-Hamadoun, Nilima Kumari, Julien Frouin, Arvind Kumar and Nourollah Ahmadi. 2019. Selection of trait-specific markers and multi-environment models improve genomic predictive ability in rice. DOI: https://doi.org/10.1371/journal.pone.0208871. Note: institution: IRRI Number of accession(s) cited: 280
Aditi Bhandari, Nitika Sandhu, J�r�me Bartholome, Tuong-Vi Cao-Hamadoun, Nourollah Ahmadi, Nilima Kumari and Arvind Kumar. 2020. Genome-Wide Association Study for Yield and Yield Related Traits under Reproductive Stage Drought in a Diverse indica-aus Rice Panel. DOI: https://doi.org/10.1186/s12284-020-00406-3. Note: Couldn't find MTU 1010; institution: IRRI Number of accession(s) cited: 9
Ai Kitazumi, Isaiah C. M. Pabuayon, Hajime Ohyanagi, Masahiro Fujita, Bipush Osti, Matthew R. Shenton, Yusuke Kakei, Yasukazu Nakamura, Darshan S. Brar, Nori Kurata and Benildo G. de los Reyes. 2018. Potential of Oryza officinalis to augment the cold tolerance genetic mechanisms of Oryza sativa by network complementation. DOI: DOI:10.1038/s41598-018-34608-z. Note: institution: IRRI Number of accession(s) cited: 8
Alberto Casartelli, David Riewe, Hans Michael Hubberten, Thomas Altmann, Rainer Hoefgen and Sigrid Heuer. 2018. Exploring traditional aus-type rice for metabolites conferring drought tolerance. DOI: https://doi.org/10.1186/s12284-017-0189-7. Note: institution: Outside IRRI Number of accession(s) cited: 4
Amita B. Juliano, Ma. Elizabeth B. Naredo and M.T. Jackson. 1997. Taxonomic status of Oryza glumaepatula Steud. I. Comparative morphological studies of New World diploids and Asian AA genome species. DOI: https://doi.org/10.1023/A:1008682316449. Note: institution: IRRI Number of accession(s) cited: 65
Amita B. Juliano, Maria Elizabeth B. Naredo, Bao-Rong Lu and Michael T. Jackson. 2005. Genetic differentiation in Oryza meridionalis Ng based on molecular and crossability analyses. DOI: DOI:10.1007/s10722-005-2259-8. Note: institution: IRRI Number of accession(s) cited: 33
Ana L. Caicedo, Scott H. Williamson, Ryan D. Hernandez, Adam Boyko, Adi Fledel-Alon, Thomas L. York, Nicholas R. Polato, Kenneth M. Olsen, Rasmus Nielsen, Susan R. McCouch, Carlos D. Bustamante and Michael D. Purugganan. 2007. Genome-Wide Patterns of Nucleotide Polymorphism in Domesticated Rice. DOI: doi:10.1371/journal.pgen.0030163.eor. Note: institution: Outside IRRI Number of accession(s) cited: 59
Andrea Zuccolo, Jetty S. S. Ammiraju, HyeRan Kim, Abhijit Sanyal, Scott Jackson and Rod A. Wing. 2008. Rapid and Differential Proliferation of the Ty3-Gypsy LTR Retrotransposon Atlantys in the Genus Oryza. DOI: DOI 10.1007/s12284-008-9002-y. Note: institution: Outside IRRI Number of accession(s) cited: 11
Anthony J. Travis, Gareth J. Norton, Sutapa Datta, Ramendra Sarma, Tapash Dasgupta, Filipe L. Savio, Malcolm Macaulay, Peter E. Hedley, Kenneth L. McNally, Mahmud H. Sumon, M. Rafiqul Islam and Adam H. Price. 2015. Assessing the genetic diversity of rice originating from Bangladesh, Assam and West Bengal. DOI: https://doi.org/10.1186/s12284-015-0068-z. Note: institution: IRRI Number of accession(s) cited: 392
Arvinder Singh, Yogesh Kumar and N. K. Matta. 2018. Electrophoretic variation in seed proteins and interrelationships of species in the genus Oryza. DOI: doi.org/10.1007/s10722-018-0665-y. Note: institution: Outside IRRI Number of accession(s) cited: 18
B. Jyothi, B. Divya, L. V. Subba Rao, P. Laxmi Bhavani, P. Revathi, P. Raghuveer Rao, B. Rachana, G. Padmavathi, J. Aravind Kumar, C. Gireesh, M. S. Anantha, R. Abdul Fiyaz, C. Suvarna Rani and A. R. G. Ranganatha. 2018. New plant type trait characterization and development of core set among indica and tropical japonica genotypes of rice. DOI: https://doi.org/10.1017/S1479262118000084. Note: institution: Outside IRRI Number of accession(s) cited: 21
B. L. Hass, J. C. Pires, R. Porter, R. L. Phillips and S. A. Jackson. 2003. Comparative genetics at the gene and chromosome levels between rice (Oryza sativa) and wildrice (Zizania palustris). DOI: DOI 10.1007/s00122-003-1273-5. Note: institution: Outside IRRI Number of accession(s) cited: 4
B. P. M. Swamy, K. Kaladhar, K. Anuradha, Anil K. Batchu, T. Longvah and N. Sarla. 2018. QTL Analysis for Grain Iron and Zinc Concentrations in Two O. nivara Derived Backcross Populations. DOI: https://doi.org/10.1016/j.rsci.2018.06.003. Note: institution: IRRI Number of accession(s) cited: 2
B. P. Mallikarjuna Swamy, K. Kaladhar, N. Shobha Rani, G. S. V. Prasad, B. C. Viraktamath, G. Ashok Reddy, and N. Sarla. 2012. QTL Analysis for Grain Quality Traits in 2 BC2F2 Populations Derived from Crosses between Oryza sativa cv Swarna and 2 Accessions of O. nivara. DOI: https://doi.org/10.1093/jhered/esr145. Note: institution: IRRI Number of accession(s) cited: 2
B.J. Parsons, H.J. Newbury, M.T. Jackson and B.V. Ford-Lloyd. 1999. The genetic structure and conservation of aus, aman and boro rices from Bangladesh.. DOI: https://doi.org/10.1023/A:1008749532171. Note: institution: IRRI Number of accession(s) cited: 115
Balram Marathi, Joie Ramos, Sherry L. Hechanova, Rowena H. Oane and Kshirod K. Jena. 2014. SNP genotyping and characterization of pistil traits revealing a distinct phylogenetic relationship among the species of Oryza. DOI: DOI 10.1007/s10681-014-1213-2. Note: institution: IRRI Number of accession(s) cited: 43
Bao-Rong Lu, Ma. Elizabeth B. Naredo, Amita B. Juliano and Michael T. Jackson. 1998. Taxonomic status of Oryza glumaepatula Steud. III. Assessment of genomic affinity among AA genome species from the NewWorld, Asia, and Australia. DOI: https://doi.org/10.1023/A:1008686517357. Note: institution: IRRI Number of accession(s) cited: 25
Beatriz Andreo-Jimenez, Philippe Vandenkoornhuyse, Amandine L� Van, Arvid Heutinck1, Marie Duhamel, Niteen Kadam, Krishna Jagadish, Carolien Ruyter-Spira and Harro Bouwmeester. 2019. Plant host and drought shape the root associated fungal microbiota in rice. DOI: DOI 10.7717/peerj.7463. Note: Ten out of the 15 cultivars were selected to maximize the genetic variation using the SNP information available from a published study (Zhao et al., 2011). The five additional cultivars were selected based on their drought tolerance phenotype, and their information is available in IRGCIS database:; institution: IRRI Number of accession(s) cited: 15
Bernard O.Budot, Jaymee R. Encabo, Israel Dave V. Ambita, Genelou A. Atienza-Grande, Kouji Satoh, Hiroaki Kondoh, Victor J. Ulat, Ramil Mauleon, Shoshi Kikuchi and Il-Ryong Choi. 2014. Suppression of cell wall-related genes associated with stunting of Oryza glaberrima infected with Rice tungro spherical virus. DOI: https://doi.org/10.3389/fmicb.2014.00026. Note: institution: IRRI Number of accession(s) cited: 18
Beverley J. Parsons, H. John Newbury, Michael T. Jackson and Brian V. Ford-Lloyd. 1997. Contrasting genetic diversity relationships are revealed in rice (Oryza sativa L.) using different marker types. DOI: https://doi.org/10.1023/A:1009635721319. Note: institution: IRRI Number of accession(s) cited: 19
C. Bounphanousay, P. Jaisil, K.L. McNally, J. Sanitchon, N.R. Sackville Hamilton. 2008. Variation of Microsatellite Markers in a Collection of Lao's Black Glutinous Rice (Oryza sativa L.). DOI: DOI: 10.3923/ajps.2008.140.148. Note: institution: IRRI Number of accession(s) cited: 55
C. Martin, A. Juliano, H.J. Newbury, B-R. Lu, M.T. Jackson and B.V. Ford-Lloyd. 1996. The use of RAPD markers to facilitate the identification of Oryza species within a germplasm collection. DOI: https://doi.org/10.1023/A:1008678231467. Note: institution: IRRI Number of accession(s) cited: 92
C.-B. Li, D.-M. Zhang, S. Ge, B.-R. Lu and D.-Y. Hong. 2001. Identification of genome constitution of Oryza malampuzhaensis, O. minuta, and O. punctata by multicolor genomic in situ hybridization. DOI: https://doi.org/10.1007/s001220100563. Note: institution: IRRI Number of accession(s) cited: 8
Chitra Raghavan, Ma. Elizabeth B. Naredo, Hehe Wang, Genelou Atienza, Bin Liu, Fulin Qiu, Kenneth L. McNally and Hei Leung. 2006. Rapid method for detecting SNPs on agarose gels and its application in candidate gene mapping. DOI: https://doi.org/10.1007/s11032-006-9046-x. Note: institution: IRRI Number of accession(s) cited: 43
Chongrong Wang, Sheng Chen and Sibin Yu. 2010. Functional markers developed from multiple loci in GS3 for fine marker-assisted selection of grain length in rice. DOI: DOI 10.1007/s00122-010-1497-0. Note: institution: Outside IRRI Number of accession(s) cited: 65
Cong Shi, Wei Li, Qun-Jie Zhang, Yun Zhang, YanTong, Kui Li3, Yun-Long Liu and Li-ZhiGao. 1998. The draft genome sequence of an upland wild rice species, Oryza granulata. DOI: https://doi.org/10.1038/s41597-020-0470-2. Note: institution: Outside IRRI Number of accession(s) cited: 1
Courtney E. Jahn, John K. Mckay, Ramil Mauleon, Janice Stephens, Kenneth L. McNally, Daniel R. Bush, Hei Leung and Jan E. Leach. 2011. Genetic Variation in Biomass Traits among 20 Diverse Rice Varieties. DOI: DOI: 10.1104/pp.110.165654. Note: institution: IRRI Number of accession(s) cited: 19
Cuong D. Nguyen, Holden Verdeprado, Demeter Zita, Sachiyo Sanada-Morimura, Masaya Matsumura, Parminder S. Virk, Darshan S. Brar, Finbarr G. Horgan, Hideshi Yasui and Daisuke Fujita. 2019. The Development and Characterization of Near-Isogenic and Pyramided Lines Carrying Resistance Genes to Brown Planthopper with the Genetic Background of Japonica Rice (Oryza sativa L.). DOI: doi:10.3390/plants8110498. Note: institution: IRRI Number of accession(s) cited: 3
D.S. Kishor Jeonghwan Seo Joong Hyoun Chin Hee-Jong Koh. 2020. Evaluation of Whole-Genome Sequence, Genetic Diversity, and Agronomic Traits of Basmati Rice (Oryza sativa L.). DOI: https://doi.org/10.3389/fgene.2020.00086. Note: institution: Outside IRRI Number of accession(s) cited: 30
Daichi Kuniyoshi, Itaru Masuda, Yoshitaka Kanaoka, Yuki Shimazaki-Kishi, Yoshihiro Okamoto, Hideshi Yasui, Toshio Yamamoto, Kiyotaka Nagaki, Yoichiro Hoshino, Yohei Koide, Itsuro Takamure and Yuji Kishima. 2020. Diploid Male Gametes Circumvent Hybrid Sterility Between Asian and African Rice Species. DOI: https://doi.org/10.3389/fpls.2020.579305. Note: institution: Outside IRRI Number of accession(s) cited: 1
Dan Zhu, Houxiang Kang, Zhiqiang Li, Minghao Liu, Xiaoli Zhu, Yue Wang, Dan Wang, Zhilong Wang, Wende Liu and Guo-Liang Wang. 2016. A Genome-Wide Association Study of Field Resistance to Magnaporthe Oryzae in Rice. DOI: https://doi.org/10.1186/s12284-016-0116-3. Note: institution: Outside IRRI Number of accession(s) cited: 32
Dante L. Adorada, B. J. Stodart, C. Vera Cruz, G. Gregorio, I. Pangga, and G. J. Ash. 2012. Standardizing resistance screening to Pseudomonas fuscovaginae and evaluation of rice germplasm at seedling and adult plant growth stages. DOI: DOI 10.1007/s10681-012-0804-z. Note: institution: IRRI Number of accession(s) cited: 21
Diane R. Wang, Edward J. Wolfrum, Parminder Virk, Abdelbagi Ismail, Anthony J. Greenberg and Susan R. McCouch. 2016. Robust phenotyping strategies for evaluation of stem non-structural carbohydrates (NSC) in rice. DOI: doi:10.1093/jxb/erw375. Note: institution: IRRI Number of accession(s) cited: 2
E. M. Septiningsih, K. R. Trijatmiko, S. Moeljopawiro and S. R. McCouch. 2003. Identification of quantitative trait loci for grain quality in an advanced backcross population derived from the Oryza sativa variety IR64 and the wild relative O. rufipogon. DOI: https://doi.org/10.1007/s00122-003-1376-z. Note: institution: Outside IRRI Number of accession(s) cited: 1
Eug�nie H�brard, Agn�s Pinel-Galzi, Aderonke Oludare, Nils Poulicard, Jamel Aribi, Sandrine Fabre, Souley Issaka, C�dric Mariac, Alexis Dereeper, Laurence Albar, Drissa Silu� and Denis Fargette. 2018. Identification of a Hypervirulent Pathotype of Rice yellow mottle virus: A Threat to Genetic Resistance Deployment in West-Central Africa. DOI: https://doi.org/10.1094/PHYTO-05-17-0190-R. Note: institution: Outside IRRI Number of accession(s) cited: 3
Eung-Gi Jeong, Darshan S. Brar, Kyung-Ho Kang, Heung-Goo Hwang, Kshirod K. Jena, Ho-Yeong Kim, Sang-Nag Ahn, Gihwan Yi and Min-Hee Nam. 2005. Cytological Characterization of Interspecific Hybrids in Rice (Oryza sativa L.). Note: Couldn't find DOI; institution: IRRI Number of accession(s) cited: 4
F.R. NIAZI, I. DASGUPTA, J. SINGH, S. MATHUR and A. VARMA. 2004. Characterization of new strains in rice tungro Viruses. DOI: https://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.950.9800&rep=rep1&type=pdf. Note: couldn't find DOI; institution: Outside IRRI Number of accession(s) cited: 1
Fanmiao Wang, Toshisangba Longkumer, Sheryl C. Catausan, Carla Lenore F. Calumpang, Jeshurun A. Tarun, Jerome Cattin?Ortola, Takuma Ishizaki, Juan Pariasca Tanaka, Terry Rose, Matthias Wissuwa and Tobias Kretzschmar. 2018. Genome?wide association and gene validation studies for early root vigour to improve direct seeding of rice. DOI: DOI: 10.1111/pce.13400. Note: institution: IRRI Number of accession(s) cited: 307
Fengshan Liang, Qiyun Deng, Yueguang Wang, Yuedong Xiong, Demin Jin, Jiming Li and Bin Wang. 2004. Molecular marker-assisted selection for yield-enhancing genes in the progeny of �9311� O. rufipogon� using SSR. DOI: https://doi.org/10.1007/s10681-004-2560-1. Note: institution: Outside IRRI Number of accession(s) cited: 1
Finbarr G. Horgana, Maria-Liberty P. Almazan, Quynh Vu, Angelee Fame Ramal, Carmencita C. Bernal, Hideshi Yasui and Daisuke Fujita. 2018. Unanticipated benefits and potential ecological costs associated with pyramiding leafhopper resistance loci in rice. DOI: https://doi.org/10.1016/j.cropro.2018.09.013. Note: institution: IRRI Number of accession(s) cited: 2
Fiona R. Hay Rocel Valdez Jae-Sung Lee and Pompe C. Sta. Cruz. 2018. Seed longevity phenotyping: recommendations on research methodology. DOI: https://doi.org/10.1093/jxb/ery358. Note: institution: IRRI Number of accession(s) cited: 39
Fiona R. Hay, Flora de Guzman, David Ellis, Hazel Makahiya, Teresita Borromeo and N. Ruaraidh Sackville Hamilton. 2012. Viability of Oryza sativa L. seeds stored under genebank conditions for up to 30 years. DOI: DOI 10.1007/s10722-012-9833-7. Note: institution: IRRI Number of accession(s) cited: 78
Fiona R. Hay, Stephen Timple and Bert van Duijn. 2015. Can chlorophyll fluorescence be used to determine the optimal time to harvest rice seeds for long-term genebank storage?. DOI: DOI: 10.1017/S0960258515000082. Note: institution: IRRI Number of accession(s) cited: 20
G. Aluko, C. Martinez, J. Tohme, C. Castano, C. Bergman and J. H. Oard. 2004. QTL mapping of grain quality traits from the interspecific cross Oryza sativa � O. glaberrima. DOI: DOI 10.1007/s00122-004-1668-y. Note: institution: Outside IRRI Number of accession(s) cited: 1
G. C. Eizenga, H. A. Agrama, F. N. Lee and Y. Jia. 2008. Exploring genetic diversity and potential novel disease resistance genes in a collection of rice (Oryza spp.) wild relatives. DOI: https://doi.org/10.1007/s10722-008-9345-7. Note: institution: Outside IRRI Number of accession(s) cited: 28
G. Haritha, B.P.M. Swamy, M.L. Naik, B. Jyothi, B. Divya, S. Malathi and N. Sarla. 2018. Yield Traits and Associated Marker Segregation in Elite Introgression Lines Derived from O. sativa � O. nivara. DOI: https://doi.org/10.1016/j.rsci.2017.11.001. Note: institution: IRRI Number of accession(s) cited: 1
G. Haritha, B.P.M. Swamy, M.L. Naik, B. Jyothi, B. Divya, S. Malathi and N. Sarla. 2018. Yield Traits and Associated Marker Segregation in Elite Introgression Lines Derived from O. sativa � O. nivara. DOI: https://doi.org/10.1016/j.rsci.2017.11.001. Note: institution: IRRI Number of accession(s) cited: 1
G. Mohammadi-Nejad, A. Arzani, A. M. Rezai, R.K. Singh and G. B. Gregorio. 2008. Assessment of rice genotypes for salt tolerance using microsatellite markers associated with the saltol QTL. Note: Couldn't find DOI; institution: IRRI Number of accession(s) cited: 9
G. Ramkumar, G. D. Prahalada, Sherry Lou Hechanova, Ricky Vinarao and Kshirod K. Jena. 2015. Development and validation of SNP-based functional codominant markers for two major disease resistance genes in rice (O. sativa L.). DOI: DOI 10.1007/s11032-015-0323-4. Note: institution: IRRI Number of accession(s) cited: 260
G. Ramkumar, M. S. Madhav, S. J. S. Rama Devi, B. Makanth, M. K. Pandey, M. S. Prasad, R. M. Sundaram, B. C. Viraktamath and V. Ravindra Babu. 2016. Identification and validation of novel alleles of rice blast resistant gene Pi54, and analysis of their nucleotide diversity in landraces and wild Oryza species. DOI: https://doi.org/10.1007/s10681-016-1666-6. Note: institution: Outside IRRI Number of accession(s) cited: 103
Gandhimani Ramkumar, G.D. Prahalada, Sherry Lou Hechanova, Sung-Ryul Kim and Kshirod K. Jena. 2016. Exploring genetic diversity of rice cultivars for the presence of brown planthopper (BPH) resistance genes and development of SNP marker for Bph190. DOI: doi:10.1111/pbr.12365. Note: institution: IRRI Number of accession(s) cited: 260
Gareth J. Norton, Anthony J. Travis, Alex Douglas, Susan Fairley, Eduardo De Paiva Alves, Panthita Ruang-areerate, Ma. Elizabeth B. Naredo, Kenneth L. McNally, Mahmud Hossain, Md. Rafiqul Islam and Adam H. Price. 2018. Genome Wide Association Mapping of Grain and Straw Biomass Traits in the Rice Bengal and Assam Aus Panel (BAAP) Grown Under Alternate Wetting and Drying and Permanently Flooded Irrigation. DOI: https://doi.org/10.3389/fpls.2018.01223. Note: institution: IRRI Number of accession(s) cited: 48
Geoffrey Onaga, James Egdane, Richard Edema and Ismail Abdelbagi. 2013. Morphological and genetic diversity analysis of rice accessions (Oryza sativa L.) differing in iron toxicity tolerance. DOI: https://doi.org/10.1007/s12892-012-0104-0. Note: institution: IRRI Number of accession(s) cited: 7
George Thomas, Latha Joseph, George Varghese, K. Kalyanaraman, Philomena Kuriachan and M.R. Das. 2001. Discrimination between Oryza malampuzhaensis Krish. et Chand. and Oryza officinalis Wall ex Watt based on RAPD markers and morphological traits. DOI: https://doi.org/10.1023/A:1012602516236. Note: institution: Outside IRRI Number of accession(s) cited: 5
Gerbert Sylvestre Dossa, Ricardo Oliva, Edgar Maiss, Casiana Vera Cruz and Kerstin Wydra. 2017. High Temperature Enhances the Resistance of Cultivated African Rice, Oryza glaberrima, to Bacterial Blight. DOI: https://doi.org/10.1094/PDIS-05-15-0536-RE. Note: institution: IRRI Number of accession(s) cited: 16
Gui Xiao, Frances Nikki Borja, Ramil Mauleon, Jonas Padilla, Mary Jeanie Telebanco-Yanoria, Jianxia Yang, Guodong Lu, Maribel Dionisio-Sese and Bo Zhou. 2017. Identification of resistant germplasm containing novel resistance genes at or tightly linked to the Pi2/9 locus conferring broad-spectrum resistance against rice blast. DOI: https://doi 10.1186/s12284-017-0176-z. Note: institution: IRRI Number of accession(s) cited: 405
Gustave Djedatin, Marie-No�lle Ndjiondjop, Thierry Mathieu, Casiana M. Vera Cruz, Ambaliou Sanni, Alain Ghesqui�re and Val�rie Verdier. 2011. Evaluation of African Cultivated Rice Oryza glaberrima for Resistance to Bacterial Blight. DOI: doi:10.1094/PDIS-08-10-0558. Note: institution: IRRI Number of accession(s) cited: 2
H.H. Yan, G.Q. Liu, Z.K. Cheng, X.B. Li, G.Z. Liu and L.H. Zhu. 2002. A genome-specific repetitive DNA sequence from Oryza eichingeri: characterization, localization, and introgression to O. sativa. DOI: https://doi.org/10.1007/s001220100766. Note: institution: Outside IRRI Number of accession(s) cited: 12
Hei Leung, Chitra Raghavan, Bo Zhou, Ricardo Oliva, Il Ryong Choi, Vanica Lacorte, Mona Liza Jubay, Casiana Vera Cruz, Glenn Gregorio, Rakesh Kumar Singh, Victor Jun Ulat, Frances Nikki Borja, Ramil Mauleon, Nickolai N. Alexandrov, Kenneth L. McNally and Ruaraidh Sackville Hamilton. 2015. Allele mining and enhanced genetic recombination for rice breeding. DOI: DOI 10.1186/s12284-015-0069-y. Note: institution: IRRI Number of accession(s) cited: 2
HyunJung Kim, Eung Gi Jeong, Sang-Nag Ahn, Jeffrey Doyle, Namrata Singh, Anthony J Greenberg, Yong Jae Won and Susan R McCouch. 2014. Nuclear and chloroplast diversity and phenotypic distribution of rice (Oryza sativa L.) germplasm from the democratic people�s republic of Korea (DPRK; North Korea). DOI: https://doi.org/10.1186/s12284-014-0007-4. Note: institution: Outside IRRI Number of accession(s) cited: 1
HyunJung Kim, Janelle Jung, Namrata Singh, Anthony Greenberg, Jeff J. Doyle, Wricha Tyagi, Jong-Wook Chung, Jennifer Kimball, Ruaraidh Sackville Hamilton and Susan R. McCouch. 2016. Population Dynamics Among six Major Groups of the Oryza rufipogon Species Complex, Wild Relative of Cultivated Asian Rice. DOI: DOI 10.1186/s12284-016-0119-0. Note: institution: IRRI Number of accession(s) cited: 314
Ichiro Nakamura, Seiichi Murayama, Satoshi Tobita, Bui Ba Bong, Seiji Yanagihara, Yukio Islb.imine and Yoshinobu Kawamitsu. 2015. Effect of NaCI on the Photosynthesis, Water Relations and Free Proline Acculnulation in the Wild Oryza Species. DOI: https://doi.org/10.1626/pps.5.305. Note: institution: IRRI Number of accession(s) cited: 2
In�s S. Piresa, S�nia Negrao, M. Margarida Oliveira and Michael D. Purugganan. 2015. Comprehensive phenotypic analysis of rice (Oryza sativa) response to salinity stress. DOI: https://doi.org/10.1111/ppl.12356. Note: institution: Outside IRRI Number of accession(s) cited: 51
Issa Wonni, Gustave Djedatin, L�onard Ou�draogo and Val�rie Verdier. 2015. Evaluation of Rice Germplasm against Bacterial Leaf Streak Disease Reveals Sources of Resistance in African Varieties. DOI: http://dx.doi.org/10.4172/2157-7471.1000312. Note: institution: Outside IRRI Number of accession(s) cited: 2
J. Xu, S. V. Constantino, G. Magpantay, J. Bennett, S. Sarkarung and N. Huang. 1997. Classification of rice germplasm. II. Discrimination of indica from japonica via analysis of amplicon length polymorphisms. DOI: https://doi.org/10.1007/s002990050457. Note: institution: IRRI Number of accession(s) cited: 103
J. Zhu, M. D. Gale, S. Quarrie, M. T. Jackson and G. J. Bryan. 1997. AFLP markers for the study of rice biodiversity. DOI: https://doi.org/10.1007/s001220050778. Note: institution: IRRI Number of accession(s) cited: 57
Jae Young Choi, Maricris Zaidem, Rafal Gutaker, Katherine Dorph, Rakesh Kumar Singh and Michael D. Purugganan. 2019. The complex geography of domestication of the African rice Oryza glaberrima. DOI: https://doi.org/10.1371/journal.pgen.1007414. Note: institution: IRRI Number of accession(s) cited: 203
Jae Young Choi, Zoe N. Lye, Simon C. Groen, Xiaoguang Dai, Priyesh Rughani, Sophie Zaaijer, Eoghan D. Harrington, Sissel Juul and Michael D. Purugganan. 2020. Nanopore sequencing-based genome assembly and evolutionary genomics of circum-basmati rice. DOI: DOI 10.1186/s13059-020-1938-2. Note: institution: Outside IRRI Number of accession(s) cited: 2
Jae-Sung Lee, Jieun Kwak, Mi-Ra Yoon, Jeom-Sig Lee and Fiona R. Hay. 2017. Contrasting tocol ratios associated with seed longevity in rice variety groups. DOI: doi:10.1017/S0960258517000265. Note: institution: IRRI Number of accession(s) cited: 20
Jae-Sung Lee, Matthias Wissuwa, Oscar B. Zamora and Abdelbagi M. Ismail. 2018. Novel Sources of aus Rice for Zinc Deficiency Tolerance Identified Through Association Analysis Using High-Density SNP Array. DOI: https://doi.org/10.1016/j.rsci.2018.08.004. Note: institution: IRRI Number of accession(s) cited: 108
Jae-Sung Lee, Tobias Kretzschmar, Kenneth L. McNally, Abdel M. Ismail, Pompe C. Sta. Cruz, N. Ruaraidh Sackville Hamilton, Fiona R. Hay, Myrish Pacleb, Rocel Valdez and Marlina Velasco-Punzalan. 2019. Variation in seed longevity among diverse Indica rice varieties. DOI: doi: 10.1093/aob/mcz093. Note: institution: IRRI Number of accession(s) cited: 299
James Silva, Brian Scheffler, Yamid Sanabria, Christian De Guzman, Dominique Galam, Andrew Farmer, Jimmy Woodward, Gregory May and James Oard. 2011. Identification of candidate genes in rice for resistance to sheath blight disease by whole genome sequencing. DOI: DOI 10.1007/s00122-011-1687-4. Note: institution: Outside IRRI Number of accession(s) cited: 2
Jason P. Lond, Yu-Chung Chiang, Kuo-Hsiang Hung, Tzen-Yuh Chiang and Barbara A. Schaal. 2006. Phylogeography of Asian wild rice, Oryza rufipogon, reveals multiple independent domestications of cultivated rice, Oryza sativa. DOI: https://doi.org/10.1073/pnas.0603152103. Note: institution: Outside IRRI Number of accession(s) cited: 225
Jian Zhang, Kai Chen, Yunlong Pang, Shahzad Amir Naveed, Xiuqin Zhao, Xiaoqian Wang, Yun Wang, Michael Dingkuhn, Julie Pasuquin, Zhikang Li and Jianlong Xu. 2017. QTL mapping and candidate gene analysis of ferrous iron and zinc toxicity tolerance at seedling stage in rice by genome-wide association study. DOI: DOI 10.1186/s12864-017-4221-5. Note: institution: IRRI Number of accession(s) cited: 222
Jinbin Li, Yiding Sun, Hui Liu, Yanyan Wang, Yulin Jia and Minghui Xu. 2013. Genetic variation and evolution of the Pit blast resistance locus in rice. DOI: https://doi.org/10.1007/s10722-013-0051-8. Note: institution: Outside IRRI Number of accession(s) cited: 31
Jing Tan, Niranjan Baisakh, Norman Oliva, Vilas Parkhi, Mayank Rai, Lina Torrizo, Karabi Datta and Swapan K. Datta. 2005. The screening of rice germplasm, including those transgenic rice lines which accumulate b carotene in their polished seeds, for their carotenoid profile. DOI: https://doi.org/10.1111/j.1365-2621.2005.00971.x. Note: institution: IRRI Number of accession(s) cited: 74
Jinhua Xiao, Jiming Li, Silvana Grandillo, Sang Nag Ahn, Longping Yuan, Steven D. Tanksley and Susan R. McCouch. 1998. Identification of Trait-Improving Quantitative Trait Loci Alleles From a Wild Rice Relative, Oryza rufipogon. DOI: PMCID: PMC1460369 (DOI not cited). Note: institution: Outside IRRI Number of accession(s) cited: 1
John Damien Platten, James A Egdane and Abdelbagi M Ismail. 2013. Salinity tolerance, Na+ exclusion and allele mining of HKT1;5 in Oryza sativa and O. glaberrima: many sources, many genes, one mechanism?. DOI: doi:10.1186/1471-2229-13-32. Note: institution: IRRI Number of accession(s) cited: 186
John N. Ferguson, Lorna McAusland, Kellie E. Smith, Adam H. Price, Zoe A. Wilson and Erik H. Murchie. 2010. Rapid temperature responses of photosystem II ef?ciencyforecast genotypic variation in rice vegetative heat tolerance. DOI: https://doi.org/10.1111/tpj.14956. Note: institution: Outside IRRI Number of accession(s) cited: 2
Joie M. Ramos, Tomoyuki Furuta, Kanako Uehara, Niwa Chihiro, Rosalyn B. Angeles-Shim, Junghyun Shim, Darshan S. Brar, Motoyuki Ashikari and Kshirod K. Jena. 2016. Development of chromosome segment substitution lines (CSSLs) of Oryza longistaminata A. Chev. & R�hr in the background of the elite japonica rice cultivar, Taichung 65 and their evaluation for yield traits. DOI: https://doi.org/10.1007/s10681-016-1685-3. Note: institution: IRRI Number of accession(s) cited: 2
Jolly Chatterjee, Vivek Thakur, Robert Nepomuceno, Robert A. Coe, Jacqueline Dionora, Abigail Elmido-Mabilangan, Abraham Darius Llave, Anna Mae Delos Reyes, Apollo Neil Monroy, Irma Canicosa, Anindya Bandyopadhyay, Kshirod K. Jena, Darshan S. Brar and William Paul Quick. 2020. Natural Diversity in Stomatal Features of Cultivated and Wild Oryza Species. DOI: https://doi.org/10.1186/s12284-020-00417-0. Note: institution: IRRI Number of accession(s) cited: 21
Joong Hyoun Chin, Yoo-Jin Lee, Wenzhu Jiang, Hee-Jong Koh and Michael J. Thomson. 2016. Characterization of indica�japonica subspecies-specific InDel loci in wild relatives of rice (Oryza sativa L. subsp. indica Kato and subsp. japonica Kato). DOI: DOI 10.1007/s10722-016-0368-1. Note: institution: IRRI Number of accession(s) cited: 31
Joshua C. Stein, Yeisoo Yu, Dario Copetti, Derrick J. Zwick, Li Zhang, Chengjun Zhang, Kapeel Chougule, Dongying Gao, Aiko Iwata, Jose Luis Goicoechea, Sharon Wei, Jun Wang, Yi Liao, Muhua Wang, Julie Jacquemin, Claude Becker, Dave Kudrna and Jianwei . 2018. Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza. DOI: https://doi.org/10.1038/s41588-018-0040-0. Note: institution: IRRI Number of accession(s) cited: 6
Juan Pariasca-Tanaka, Mathias Lorieux, Chunlin He, Susan McCouch, Michael J. Thomson and Matthias Wissuwa. 2014. Development of a SNP genotyping panel for detecting polymorphisms in Oryza glaberrima/O. sativa interspecific crosses. DOI: DOI 10.1007/s10681-014-1183-4. Note: institution: IRRI Number of accession(s) cited: 7
K. C. Park, N. H. Kim, Y. S. Cho, K. H. Kang, J. K. Lee and N.-S. Kim. 2003. Genetic variations of AA genome Oryza species measured by MITE-AFLP. DOI: https://doi.org/10.1007/s00122-003-1252-x. Note: institution: Outside IRRI Number of accession(s) cited: 55
K. J. Whitehouse, F. R. Hay and R. H. Ellis. 2015. Increases in the longevity of desiccation-phase developing rice seeds: response to high temperature drying depends on harvest moisture content. DOI: doi:10.1093/aob/mcv091. Note: institution: IRRI Number of accession(s) cited: 20
K. N. Ta, H. Adam, Y. M. Staedler, J. Sch�nenberger, T. Harrop, J. Tregear, N. V. Do, P. Gantet, A. Ghesqui�re and S. Jouannic. 2017. Differences in meristem size and expression of branching genes are associated with variation in panicle phenotype in wild and domesticated African rice. DOI: DOI 10.1186/s13227-017-0065-y. Note: institution: Outside IRRI Number of accession(s) cited: 2
K. Nemoto, Y. Ukai, D.-Q. Tang, Y. Kasai and M. Morita. 2004. Inheritance of early elongation ability in floating rice revealed by diallel and QTL analyses. DOI: DOI 10.1007/s00122-004-1600-5. Note: institution: Outside IRRI Number of accession(s) cited: 3
K.J. Whitehouse, F.R. Hay and R.H. Ellis. 2018. Improvement in rice seed storage longevity from high-temperature drying is a consistent positive function of harvest moisture content above a critical value. DOI: https://doi.org/ 10.1017/S0960258518000211. Note: institution: IRRI Number of accession(s) cited: 20
Katherine J. Whitehouse, Fiona R. Hay and Richard H. Ellis. 2017. High-temperature stress during drying improves subsequent rice (Oryza sativa L.) seed longevity. DOI: doi:10.1017/S0960258517000277. Note: institution: IRRI Number of accession(s) cited: 1
Kenneth L. McNally, Kevin L. Childs, Regina Bohnert, Rebecca M. Davidson, Keyan Zhao, Victor J. Ulat, Georg Zeller, Richard M. Clark, Douglas R. Hoen, Thomas E. Bureau, Renee Stokowski, Dennis G. Ballinger, Kelly A. Frazer, David R. Cox, Badri Padhukasahasram, Carlos D. Bustamante, Detlef Weigel, David J. Mackill, Richard M. Bruskiewich, Gunnar Ratsch, C. Robin Buell, Hei Leung and Jan E. Leach. 2009. Genomewide SNP variation reveals relationships among landraces and modern varieties of rice. DOI: https://doi.org/10.1073/pnas.0900992106. Note: institution: IRRI Number of accession(s) cited: 11
Kenneth L. McNally, Richard Bruskiewich, David Mackill, C. Robin Buell, Jan E. Leach and Hei Leung. 2006. Sequencing Multiple and Diverse Rice Varieties. Connecting Whole-Genome Variation with Phenotypes. DOI: doi/10.1104/pp.106.077313. Note: institution: IRRI Number of accession(s) cited: 17
Khin Myo Myint, Brigitte Courtois, Ange-Marie Risterucci, Julien Frouin, Khin Soe, Khin Maung Thet, Apichart Vanavichit and Jean-Christophe Glaszmann. 2012. Specific patterns of genetic diversity among aromatic rice varieties in Myanmar. DOI: https://doi.org/10.1186/1939-8433-5-20. Note: institution: IRRI Number of accession(s) cited: 76
Khin Myo Myint, Siwaret Arikit, Samart Wanchana, Tadashi Yoshihashi, Kiattawee Choowongkomon and Apichart Vanavichit. 2012. A PCR-based marker for a locus conferring the aroma in Myanmar rice (Oryza sativa L.). DOI: DOI: 10.1007/s00122-012-1880-0. Note: institution: IRRI Number of accession(s) cited: 3
Kristie A. Mather, Jeanmaire Molina, Jonathan M. Flowers, Samara Rubinstein, Brad L. Rauh, Amy Lawton-Rauh, Ana L. Caicedo, Kenneth L. Mcnally and Michael D. Purugganan. 2010. Migration, isolation and hybridization in island crop populations: the case of Madagascar rice. DOI: doi: 10.1111/j.1365-294X.2010.04845.x. Note: institution: IRRI Number of accession(s) cited: 111
Kshirod K. Jena, Ma. LaRue E. Ballesfin and Ricky B. Vinarao. 2016. Development of Oryza sativa L. by Oryza punctata Kotschy ex Steud. monosomic addition lines with high value traits by interspecific hybridization. DOI: https://doi.org/10.1007/s00122-016-2745-8. Note: institution: IRRI Number of accession(s) cited: 1
Kuljit K. Cheema, Navjit K. Grewal, Yogesh Vikal, Rajiv Sharma, Jagjeet Lore, Aparna Das, Dharminder Bhatia, Ritu Mahajan, Vikas Gupta, Tajinder S. Bharaj, Kuldeep Singh . 2008. A novel bacterial blight resistance gene from Oryza nivara mapped to 38 kb region on chromosome 4L and transferred to Oryza sativa L. DOI: https://doi.org/10.1017/S0016672308009786. Note: institution: Outside IRRI Number of accession(s) cited: 1
Kumar Vasudevan, Casiana M. Vera Cruz, Wilhelm Gruissem and Navreet K. Bhullar. 2016. Geographically Distinct and Domain-Specific Sequence Variations in the Alleles of Rice Blast Resistance Gene Pib. DOI: doi: 10.3389/fpls.2016.00915. Note: institution: IRRI Number of accession(s) cited: 347
Kumari Neelam, Shiwali Thakur, Neha, Inderjit S. Yadav, Kishor Kumar, Salwinder S. Dhaliwal and Kuldeep Singh. 2017. Novel Alleles of Phosphorus-Starvation Tolerance 1 Gene (PSTOL1) from Oryza rufipogon Confers High Phosphorus Uptake Efficiency. DOI: https://doi.org/10.3389/fpls.2017.00509. Note: institution: Outside IRRI Number of accession(s) cited: 57
L. Joseph, P. Kuriachan and G. Thomas. 2007. Is Oryza malampuzhaensis Krish. et Chand. (Poaceae) a valid species? Evidence from morphological and molecular analyses. DOI: DOI 10.1007/s00606-007-0606-2. Note: institution: Outside IRRI Number of accession(s) cited: 14
L. Liu, R. Lafitte and D. Guan. 2004. Wild Oryza species as potential sources of drought-adaptive traits. DOI: https://doi.org/10.1023/B:EUPH.0000046801.27042.14. Note: institution: IRRI Number of accession(s) cited: 9
Lee, K. S., Rasabandith, S., Angeles, E. R., and Khush G. S. 2007. Inheritance of Resistance to Bacterial Blight in 21 Cultivars of Rice. DOI: https://doi.org/10.1094/PHYTO.2003.93.2.147. Note: institution: IRRI Number of accession(s) cited: 21
Liana G. Acevedo?Siaca, Robert Coe, Yu Wang, Johannes Kromdijk, W. Paul Quick and Stephen P. Long. 2020. Variation in photosynthetic induction between rice accessions and its potential for improving productivity.. DOI: doi: 10.1111/nph.16454. Note: institution: IRRI Number of accession(s) cited: 14
M. CHATURVEDI, ?. DATTA and P. K. K. NAIR. 2009. Pollen morphology of Oryza (Poaceae). DOI: DOI: 10.1080/00173139809362647. Note: institution: Outside IRRI Number of accession(s) cited: 16
M. E. B. NAREDO, AMIT A B. JULIANO, B. R. LU, FLORA DE GUZMAN and M. T. JACKSON. 1998. Responses to seed dormancy-breaking treatments in rice species (Oryza L.). DOI: https://mikejackson1948.files.wordpress.com/2015/07/64.pdf. Note: Couldn't find DOI; institution: IRRI Number of accession(s) cited: 17
M. Liakat Ali, Paul L. Sanchez, Si-bin Yu, Mathias Lorieux and Georgia C. Eizenga. 2000. Chromosome Segment Substitution Lines: A Powerful Tool for the Introgression of Valuable Genes from Oryza Wild Species into Cultivated Rice (O. sativa). DOI: DOI 10.1007/s12284-010-9058-3. Note: institution: Outside IRRI Number of accession(s) cited: 20
M.R. Islam, R.K. Singh, M.A. Salam, L. Hassan and G.B Gregorio. 2008. Molecular Diversity of Stress Tolerant Rice Genotypes using SSR Markers. Note: Couldn't find DOI; institution: IRRI Number of accession(s) cited: 6
Ma. Elizabeth B. Naredo, Amita B. Juliano, Bao Rong Lu and Michael T. Jackson. 1998. Taxonomic status of Oryza glumaepatula Steud. II. Hybridization between NewWorld diploids and AA genome species from Asia and Australia. DOI: https://doi.org/10.1023/A:1008634400519. Note: institution: IRRI Number of accession(s) cited: 20
Margaretha A. Veltman, Jonathan M. Flowers Tinde R. van Andel M. Eric Schranz. 2019. Origins and geographic diversification of African rice (Oryza glaberrima) . DOI: https://doi.org/ 10.1371/journal.pone.0203508. Note: institution: Outside IRRI Number of accession(s) cited: 102
Maria Celeste N. Banaticla-Hilario, Kenneth L. McNally, Ronald G. van den Berg and Nigel Ruaraidh Sackville Hamilton. 2013. Crossability patterns within and among Oryza series Sativae species from Asia and Australia. DOI: DOI 10.1007/s10722-013-9965-4. Note: institution: IRRI Number of accession(s) cited: 15
Maria Celeste N. Banaticla-Hilario, Ronald G. van den Berg, Nigel Ruaraidh Sackville Hamilton and Kenneth L. McNally. 2013. Local differentiation amidst extensive allele sharing in Oryza nivara and O. rufipogon. DOI: https://doi: 10.1002/ece3.689. Note: institution: IRRI Number of accession(s) cited: 125
Maria Elizabeth B. Naredo, Amita B. Juliano, Bao-Rong Lu and Michael T. Jackson. 2003. The taxonomic status of the wild rice species Oryza ridleyi Hook. f. and O. longiglumis Jansen (Ser. Ridleyanae Sharma et Shastry) from Southeast Asia. DOI: https://doi.org/10.1023/A:1023958130087. Note: institution: IRRI Number of accession(s) cited: 15
Maria Elizabeth Boncodin Naredo, Sheila Mae Quilloy Mercado, Maria Celeste Naynes Banaticla-Hilario, Myrricar Loren Berdos, Mario Alcantara Rodriguez, Kenneth Lee McNally and Ruaraidh Sackville Hamilton. 2016. Genetic diversity patterns in ex situ collections of Oryza officinalis Wall. ex G. Watt revealed by morphological and microsatellite markers. DOI: https://doi.org/10.1007/s10722-016-0396-x. Note: institution: IRRI Number of accession(s) cited: 71
Mayuri Munasinghe and Adam H. Price. 2016. Genetic and root phenotype diversity in Sri Lankan rice landraces may be related to drought resistance. DOI: DOI 10.1186/s12284-016-0092-7. Note: institution: Outside IRRI Number of accession(s) cited: 134
Md Kamal Hossain, Ong Shin Tze, Kalaivani Nadarajah, Kshirod Jena, Md Atiqur Rahman Bhuiyan and Wickneswari Ratnam. 2014. Identification and validation of sheath blight resistance in rice (Oryza sativa L.) cultivars against Rhizoctonia solani. DOI: DOI: 10.1080/07060661.2014.970577. Note: institution: IRRI Number of accession(s) cited: 4
Michael Adsetts Edberg Hansen, Fiona R. Hay and Jens Michael Carstensen. 2015. A virtual seed file: the use of multispectral image analysis in the management of genebank seed accessions. DOI: https://doi.org/10.1017/S1479262115000362. Note: institution: IRRI Number of accession(s) cited: 20
Michael J. Thomson, Endang M. Septiningsih, Fatimah Suwardjo, Tri J. Santoso, Tiur S. Silitonga and Susan R. McCouch. 2006. Genetic diversity analysis of traditional and improved Indonesian rice (Oryza sativa L.) germplasm using microsatellite markers. DOI: https://doi.org/10.1007/s00122-006-0457-1. Note: institution: IRRI Number of accession(s) cited: 3
Michael J. Thomson, Marjorie de Ocampo, James Egdane, M. Akhlasur Rahman, Andres Godwin Sajise, Dante L. Adorada, Ellen Tumimbang-Raiz, Eduardo Blumwald, Zeba I. Seraj, Rakesh K. Singh, Glenn B. Gregorio and Abdelbagi M. Ismail. 2010. Characterizing the Saltol Quantitative Trait Locus for Salinity Tolerance in Rice. DOI: DOI 10.1007/s12284-010-9053-8. Note: institution: IRRI Number of accession(s) cited: 7
Miriam D. Baltazar, John Carlos I. Ignacio, Michael J. Thomson, Abdelbagi M. Ismail, Merlyn S. Mendioro and Endang M. Septiningsih. 2019. QTL mapping for tolerance to anaerobic germination in rice from IR64 and the aus landrace Kharsu 80A. DOI: doi:10.1270/jsbbs.18159. Note: institution: IRRI Number of accession(s) cited: 1
Mohammad Rafiqul Islam, Glenn Borja Gregorio, Md. Abdus Salam, Bertrand C. Y. Collard, Rakesh Kumar Singh and Lutful Hassan. 2012. Validation of SalTol Linked Markers and Haplotype Diversity on Chromosome 1 of Rice. DOI: doi: 10.5376/mpb.2012.03.0010. Note: institution: IRRI Number of accession(s) cited: 6
Muhammad Ashfaq, Iqra Saleem, Muhammad Saleem Haider, Muhammad Ali, Javed Iqbal Watto, Muhammad Shafiq, Shahbaz Ahmad, Muhammad Asrar, Abdul Rasheed, Umair Ali, Muhammad Sajjad and Urooj Mubashar. 2020. SSR Based Screening of Rice Germplasm Against Blast Disease and its GIS Monitoring in Punjab, Pakistan. DOI: https://www.ijbbku.com/assets/custom/journals/2020/3/SSR%20BASED%20SCREENING%20OF%20RICE%20GERMPLASM%20AGAINST%20BLAST%20DISEASE%20AND%20ITS%20GIS%20MONITORING%20IN%20PUNJAB,%20PAKISTAN.pdf. Note: Couldn't find DOI; institution: Outside IRRI Number of accession(s) cited: 10
Muhua Wang Yeisoo Yu Georg Haberer Pradeep Reddy Marri Chuanzhu Fan Jose Luis Goicoechea Andrea Zuccolo Xiang Song Dave Kudrna Jetty S S Ammiraju Rosa Maria Cossu Carlos Maldonado Jinfeng Chen Seunghee Lee Nick Sisneros Kristi de Baynast Wolfgang Golser Marina Wissotski Woojin Kim Paul Sanchez Marie-Noelle Ndjiondjop Kayode Sanni Manyuan Long Judith Carney Olivier Panaud Thomas Wicker Carlos A Machado Mingsheng Chen Klaus F X Mayer Steve Rounsley Rod A Wing. 2014. The genome sequence of African rice (Oryza glaberrima) and evidence for independent domestication. DOI: doi:10.1038/ng.3044. Note: institution: Outside IRRI Number of accession(s) cited: 2
Nadia Al-Tamimi, Chris Brien, Helena Oakey, Bettina Berger, Stephanie Saade, Yung Shwen Ho, Sandra M. Schm�ckel, Mark Tester and S�nia Negr�o. 2016. Salinity tolerance loci revealed in rice using high-throughput non-invasive phenotyping. DOI: https://doi.org/10.1038/ncomms13342. Note: institution: Outside IRRI Number of accession(s) cited: 552
Nahuel Gonza�lez Schain, Ludovico Dreni, Lovely M.F. Lawas, Massimo Galbiati, Lucia Colombo, Sigrid Heuer, Krishna S.V. Jagadish and Martin M. Kater. 2015. Genome-Wide Transcriptome Analysis During Anthesis Reveals New Insights into the Molecular Basis of Heat Stress Responses in Tolerant and Sensitive Rice Varieties. DOI: DOI: 10.1093/pcp/pcv174. Note: institution: IRRI Number of accession(s) cited: 2
Namrata Singh, Trang T. M. Dang, Georgina V. Vergara, Dev Mani Pandey, Darlene Sanchez, C. N. Neeraja, Endang M. Septiningsih, Merlyn Mendioro, Evelyn Mae Tecson-Mendoza, Abdelbagi M. Ismail, David J. Mackill and Sigrid Heuer. 2010. Molecular marker survey and expression analyses of the rice submergence-tolerance gene SUB1A. DOI: DOI: 10.1007/s00122-010-1400-z. Note: institution: IRRI Number of accession(s) cited: 76
Nurul Hidayatun, Maria Genaleen Q. Diaz and Abdelbagi M. Ismail. 2017. Exploring Aluminum Tolerance at Seedling Stage in Rice (Oryza sativa, Linn) by Using Modified Magnavaca Nutrient Solution. DOI: DOI 10.21082/blpn.v23n2.2017.p81-90. Note: institution: IRRI Number of accession(s) cited: 7
O. Azzam, M. L. M. Yambao, M. Muhsin, K. L. McNally and K. M. L. Umadhay. 2000. Genetic diversity of rice tungro spherical virus in tungro-endemic provinces of the Philippines and Indonesia. DOI: https://doi.org/10.1007/s007050070118. Note: institution: IRRI Number of accession(s) cited: 4
O. Azzam, T. Imbe, R. Ikeda, P.D.Nath and E. Coloquio. 2001. Inheritance of resistance to rice tungro spherical virus in a near-isogenic line derived from Utri Merah and in rice cultivar TKM6. DOI: https://doi.org/10.1023/A:1012605218343. Note: institution: IRRI Number of accession(s) cited: 3
O. Souleymane, E. Nartey, B. Manneh, E. Danquah and K. Ofor. 2015. Phenotypic Variability of 20 Rice Genotypes Under Salt Stress. DOI: DOI: 10.3923/ijpbg.2016.45.51. Note: institution: Outside IRRI Number of accession(s) cited: 9
Olivier Cotsaftis, Darren Plett, Alexander A.T. Johnson, Harkamal Walia, Clyde Wilson, Abdelbagi M. Ismail, Timothy J. Close, Mark Tester and Ute Baumann. 2011. Root-Specific Transcript Profiling of Contrasting Rice Genotypes in Response to Salinity Stress. DOI: https://doi.org/10.1093/mp/ssq056. Note: institution: IRRI Number of accession(s) cited: 2
Onoriode Coast, Richard H. Ellis, Alistair J. Murdoch, Cherryl Qui�ones and Krishna S. V. Jagadish. 2014. High night temperature induces contrasting responses for spikelet fertility, spikelet tissue temperature, flowering characteristics and grain quality in rice. DOI: https://doi.org/10.1071/FP14104. Note: institution: IRRI Number of accession(s) cited: 7
P. Natraj Kumar, K. Sujatha, G. S. Laha, K. Srinivasa Rao, B. Mishra, B. C. Viraktamath, Y. Hari, C. S. Reddy, S. M. Balachandran, T. Ram, M. Sheshu Madhav, N. Shobha Rani, C. N. Neeraja, G. Ashok Reddy, H. Shaik, and R. M. Sundaram. 2012. Identification and fine-mapping of Xa33, a novel gene for resistance to Xanthomonas oryzae pv. Oryza. DOI: https://doi.org/10.1094/PHYTO-03-11-0075. Note: institution: Outside IRRI Number of accession(s) cited: 1
Padmini Swain, Mahender Anumalla, Smita Prusty, Bishnu Charan Marndi and Gundimeda Jwala Narasimha Rao. 2014. Characterization of some Indian native land race rice accessions for drought tolerance at seedling stage. DOI: https://search.informit.org/doi/10.3316/INFORMIT.210804620449882. Note: institution: IRRI Number of accession(s) cited: 73
Parminder S. Virk, Bian V. Ford-Lloyd, Michael T. Jackson, Harpal S. Pooni, Tomas P. Clemenot and H. John Newbury. 1995. Predicting quantitative variation within rice germplasm using molecular markers. DOI: https://doi.org/10.1038/hdy.1996.43. Note: institution: IRRI Number of accession(s) cited: 48
Parminder S. Virk, Brian V. Ford-Lloyd, Michael T. Jackson and H. John Newbury. 1994. Use of RAPD for the study of diversity within plant germplasm collections. DOI: https://doi.org/10.1038/hdy.1995.25. Note: institution: IRRI Number of accession(s) cited: 14
Parviz Fasahati, Sadequr Rahman and Wickneswari Ratnam. 2014. Genetic controls on starch amylose content in wheat and rice grains. DOI: https://doi.org/10.1007/s12041-014-0325-8. Note: institution: Outside IRRI Number of accession(s) cited: 3
Paul Tanger, Stephen Klassen, Julius P. Mojica, John T. Lovell, Brook T. Moyers, Marietta Baraoidan, Maria Elizabeth B. Naredo, Kenneth L. McNally, Jesse Poland, Daniel R. Bush, Hei Leung, Jan E. Leach and John K. McKay. 2017. Field-based high throughput phenotyping rapidly identifies genomic regions controlling yield components in rice. DOI: https://doi.org/10.1038/srep42839. Note: institution: IRRI Number of accession(s) cited: 2
Pradeep Reddy Marri, Sarla N, Laxminarayana V Reddy and EA Siddiq. 2005. Identification and mapping of yield and yield related QTLs from an Indian accession of Oryza rufipogon. DOI: doi:10.1186/1471-2156-6-33. Note: institution: Outside IRRI Number of accession(s) cited: 1
Preetinder S. Sarao, Gurpreet K. Sahi, Kumari Neelam, Gurjit S. Mangat, Bhaskar C. Patra and Kuldeep Singh. 2016. Donors for Resistance to Brown Planthopper Nilaparvata lugens (St�l) from Wild Rice Species. DOI: https://doi.org/10.1016/j.rsci.2016.06.005. Note: institution: Outside IRRI Number of accession(s) cited: 29
Puneet Paul, Balpreet K. Dhatt, Jaspreet Sandhu, Waseem Hussain, Larissa Irvin, Gota Morota, Paul Staswick and Harkamal Walia. 2019. Divergent phenotypic response of rice accessions to transient heat stress during early seed development. DOI: https://doi.org/10.1002/pld3.196. Note: Nine rice accessions from Rice Diversity Panel 1 (RDP1; Zhao et al., 2011) were selected based on their relatively similar flowering time (<120 days) to ensure that the accessions flowered under similar light conditions in the glasshouse; institution: IRRI Number of accession(s) cited: 9
R. K. Aggarwal, D. S. Brar and G. S. Khush. 1997. Two new genomes in the Oryza complex identified on the basis of molecular divergence analysis using total genomic DNA hybridization. DOI: https://doi.org/10.1007/s004380050384. Note: institution: IRRI Number of accession(s) cited: 77
R. K. Aggarwal, D. S. Brar and S. Nandi. 1999. Phylogenetic relationships among Oryza species revealed by AFLP markers. DOI: https://doi.org/10.1007/s001220051198. Note: institution: IRRI Number of accession(s) cited: 74
R. Latha, L. Rubia, J. Bennett and M. S. Swaminathan. 2004. Allele Mining for Stress Tolerance Genes in Oryza Species and Related Germplasm. DOI: https://doi.org/10.1385/mb:27:2:101. Note: institution: IRRI Number of accession(s) cited: 48
Rachana B, Eswari KB, Jyothi B, Lakshmi Devi G, Jai Vidhya LRK, Laxmi Bhavani P, Bharath M, Raghuveer Rao P, Aravind Kumar J, Fiyaz Abdul R, Neeraja CN, Subba Rao LV and T Ram. 2019. Characterization of new plant type core set of rice (Oryza sativa L.) using QTL/gene-linked markers. DOI: DOI:10.35709/ory.2019.56.4.2. Note: institution: Outside IRRI Number of accession(s) cited: 33
Rachana Bagudam, K. B. Eswari, Jyothi Badri, G. Lakshmi Devi, L. R. K. JaiVidhya, P. Bhavani, Gattu Swathi, M. Bharath, P. Raghuveer Rao, Jukanti Aravind Kumar, R. Abdul Fiyaz, C. N. Neeraja, L. V. Subba Rao and T. Ram. 2020. Morphological and molecular characterization of new plant type core set for yield and culm strength traits in rice (Oryza sativa L.). DOI: https://doi.org/10.1007/s13562-020-00581-w. Note: institution: Outside IRRI Number of accession(s) cited: 34
Railson Schreinert dos Santos, Daniel da Rosa Farias, Camila Pegoraro, Cesar Valmor Rombaldi, Takeshi Fukao, Rod A. Wing and Antonio Costa de Oliveira. 2017. Evolutionary analysis of the SUB1 locus across the Oryza genomes. DOI: https://doi.org/10.1186/s12284-016-0140-3. Note: institution: Outside IRRI Number of accession(s) cited: 7
Raj Kumar Niroula, Chiara Pucciariello, Viet The Ho, Giacomo Novi, Takeshi Fukao and Pierdomenico Perata. 2012. SUB1A?dependent and ?independent mechanisms are involved in the flooding tolerance of wild rice species. DOI: https://doi.org/10.1111/j.1365-313X.2012.05078.x. Note: institution: Outside IRRI Number of accession(s) cited: 37
Raju Bheemanahalli, Sherry Hechanova, Jena K. Kshirod and S. V. Krishna Jagadish. 2019. Root anatomical traits of wild-rices reveal links between flooded rice and dryland sorghum. DOI: https://doi.org/10.1007/s40502-019-00451-1. Note: institution: IRRI Number of accession(s) cited: 23
Ratna Karan, Teresa DeLeon, Hanamareddy Biradar and Prasanta K. Subudhi. 2012. Salt Stress Induced Variation in DNA Methylation Pattern and Its Influence on Gene Expression in Contrasting Rice Genotypes. DOI: doi:10.1371/journal.pone.0040203. Note: institution: Outside IRRI Number of accession(s) cited: 3
Reza Mohammadi, Merlys S. Mendioro, Genaleen Q. Diaz, Glenn B. Gregorio and Rakesh K. Singh. 2014. Genetic analysis of salt tolerance at seedling and reproductive stages in rice (Oryza sativa). DOI: doi:10.1111/pbr.12210. Note: institution: IRRI Number of accession(s) cited: 1
Romain Philippe, Brigitte Courtois, Kenneth L. McNally, Pierre Mournet, Redouane El-Malki, Marie Christine Le Paslier, Denis Fabre, Claire Billot, Dominique Brunel, Jean-Christophe Glaszmann and Dominique This. 2010. Structure, allelic diversity and selection of Asr genes, candidate for drought tolerance, in Oryza sativa L. and wild relatives. DOI: https://doi:10.1007/s00122-010-1348-z. Note: institution: IRRI Number of accession(s) cited: 212
Rosa Paula Cuevasa, Robert G. Gilbert and Melissa A. Fitzgeralda. 2010. Structural differences between hot-water-soluble and hot-water-insoluble fractions of starch in waxy rice (Oryza sativa L.). DOI: https://doi.org/10.1016/j.carbpol.2010.03.007. Note: institution: IRRI Number of accession(s) cited: 6
Rosa Paula O. Cuevas, Cyril John Domingo and Nese Sreenivasulu. 2018. Multivariate-based classification of predicting cooking quality ideotypes in rice (Oryza sativa L.) indica germplasm. DOI: https://doi.org/10.1186/s12284-018-0245-y. Note: institution: IRRI Number of accession(s) cited: 167
Rosalyn B. Angeles-Shim, Junghyun Shim, Ricky B. Vinarao, Ruby S. Lapis and Joshua J. Singleton. 2020. A novel locus from the wild allotetraploid rice species Oryza latifolia Desv. confers bacterial blight (Xanthomonas oryzae pv. oryzae) resistance in rice (O. sativa). DOI: https://doi.org/ 10.1371/journal.pone.0229155. Note: institution: IRRI Number of accession(s) cited: 1
Samsad Razzaque, Taslima Haque, Sabrina M. Elias, Md. Sazzadur Rahman, Sudip Biswas, Scott Schwartz, Abdelbagi M. Ismail, Harkamal Walia, Thomas E. Juenger and Zeba I. Seraj. 2017. Reproductive stage physiological and transcriptional responses to salinity stress in reciprocal populations derived from tolerant (Horkuch) and susceptible (IR29) rice. DOI: https://doi.org/10.1038/srep46138. Note: institution: IRRI Number of accession(s) cited: 2
Sancho G. Bon, Teresita H. Borromeo, Nestor C. Altoveros and Avelino D. Raymundo. 2006. Isozyme Characterization and Diversity Among the Philippine Populations of Oryza officinalis Wall ex. Watt conserved ex situ. DOI: https://philjournalsci.dost.gov.ph/images/pdf/pjs_pdf/vol135no2/pdf/Isozyme_characterization_and_diversity_among_the_Philippine_populations_of_Oryza_officinalis.pdf. Note: Couldn't find DOI; institution: Outside IRRI Number of accession(s) cited: 32
Seif Gasim, Ishraka Abuanja and Abdel-Wahab Abdalla. 2018. Genetic diversity of rice (Oryza sativa L.) accessions collected from Sudan and IRRI using SSR markers. DOI: DOI: 10.5897/AJAR2018.13554. Note: 13 accns were mentioned but only 6 accns were idetified through GRIMS. There's only one record of Mazhan on GRIMS, but the word RED is not included (IRGC 97028). IRGC 122403 (IRRI 154). IRGC 15800 (ERATIO). IRGC 49592 (DAWE). IRGC 88335 ( KHAO HLAN ON). IRGC 135888 (FL 478).; institution: Outside IRRI Number of accession(s) cited: 6
Shahid Masood Shah, Muhammad Arif, Kashif Aslam, Ghulam Shabir and Michael J. Thomson. 2015. Genetic diversity analysis of Pakistan rice (Oryza sativa) germplasm using multiplexed single nucleotide polymorphism markers. DOI: DOI 10.1007/s10722-015-0304-9. Note: institution: IRRI Number of accession(s) cited: 2
Sherry Lou Hechanova, Manas R. Prusty, Sung?Ryul Kim, LaRue Ballesfin, Joie Ramos, G. D. Prahalada and Kshirod K. Jena. 2018. Monosomic alien addition lines (MAALs) of Oryza rhizomatis in Oryza sativa: production, cytology, alien trait introgression, molecular analysis and breeding application. DOI: https://doi.org/10.1007/s00122-018-3147-x. Note: institution: IRRI Number of accession(s) cited: 1
S�nia Negr�o, M. Cec�lia Almadanim, In�s S. Pires, Isabel A. Abreu, Jo�o Maroco, Brigitte Courtois, Glenn B. Gregorio, Kenneth L. McNally and M. Margarida Oliveira. 2012. New allelic variants found in key rice salt?tolerance genes: an association study. DOI: https://doi.org/10.1111/pbi.12010. Note: institution: IRRI Number of accession(s) cited: 381
Srinivasachary, G. Beligan, L. Willocquet and S. Savary. 2013. A strategy to identify sources of quantitative resistance in pathosystems involving disease escape and physiological resistance: the case study of rice sheath blight. DOI: Doi: 10.1111/j.1365-3059.2012.02695.x. Note: institution: IRRI Number of accession(s) cited: 157
Sriprapai Chakhonkaen, Keasinee Pitnjam, Wachira Saisuk, Kittipat Ukoskit and Amorntip Muangprom. 2012. Genetic structure of Thai rice and rice accessions obtained from the International Rice Research Institute. DOI: https://doi.org/10.1186/1939-8433-5-19. Note: institution: Outside IRRI Number of accession(s) cited: 55
Stefan Reuscher, Tomoyuki Furuta, Kanako Bessho-Uehara, Michele Cosi, Kshirod K. Jena, Atsushi Toyoda, Asao Fujiyama, Nori Kurata and Motoyuki Ashikari. 2018. Assembling the genome of the African wild rice Oryza longistaminata by exploiting synteny in closely related Oryza species. DOI: DOI: 10.1038/s42003-018-0171-y. Note: institution: IRRI Number of accession(s) cited: 1
Stephen E. Timple and Fiona R. Hay. 2018. High-temperature drying of seeds of wild Oryza species intended for long-term storage. DOI: https://doi.org/10.15258/sst.2018.46.1.10. Note: institution: IRRI Number of accession(s) cited: 4
Stephen E. Timple, Fiona R. Hay, Ma. Fatima O. Mercado, Teresita H. Borromeo and Pompe C. Sta. Cruz. 2018. Response of intact seeds of wild rice (Oryza) species to dry heat treatment and dormancy-breaking chemicals. DOI: https://doi.org/10.15258/sst.2018.46.1.16. Note: institution: IRRI Number of accession(s) cited: 15
Suk-Man Kim and Russell F. Reinke. 2019. A novel resistance gene for bacterial blight in rice, Xa43(t) identified by GWAS, confirmed by QTL mapping using a bi-parental population. DOI: https://doi.org/10.1371/journal. pone.0211775. Note: institution: IRRI Number of accession(s) cited: 1
Susan R. McCouch, Megan Sweeney, Jiming Li, Hui Jiang, Michael Thomson, Endang Septiningsih, Jeremy Edwards, Pilar Moncada, Jinhua Xiao, Amanda Garris, Tom Tai, Cesar Martinez, Joe Tohme, Sugiono, Anna McClung, Long Ping Yuan and Sang-Nag Ahn. 2006. Through the genetic bottleneck: O. rufipogon as a source of trait-enhancing alleles for O. sativa. DOI: DOI 10.1007/s10681-006-9210-8. Note: institution: IRRI Number of accession(s) cited: 1
Syed Mehar Ali Shah, Hidayat-Ur-Rahman, Fida Muhammad Abbasi, Malik Ashiq Rabbani, Ijaz Ahmad Khan, Zabta Khan Shinwari and Zahir Shah. 2015. Interspecific Variation of Total Seed Protein in Wild Rice Germplasm Using SDS-PAGE. DOI: https://www.researchgate.net/publication/272828365_Interspecific_variation_of_total_seed_protein_in_wild_rice_germplasm_using_SDS-PAGE. Note: institution: Outside IRRI Number of accession(s) cited: 14
Teresa B. De Leon, Steven Linscombe, Glenn Gregorio and Prasanta K. Subudhi. 2015. Genetic variation in Southern USA rice genotypes for seedling salinity tolerance. DOI: doi: 10.3389/fpls.2015.00374. Note: institution: IRRI Number of accession(s) cited: 9
Teresita H. Borromeo. 2000. Philippine Wild Rices: Diverse and Disappearing. DOI: https://www.researchgate.net/publication/297192710_Philippine_wild_rices_Diverse_and_disappearing. Note: Couldn't find DOI; institution: Outside IRRI Number of accession(s) cited: 40
Thomas Degenkolbe, Phuc Thi Do, Ellen Zuther, Dirk Repsilber, Dirk Walther, Dirk K. Hincha and Karin I. Kohl. 2008. Expression profiling of rice cultivars differing in their tolerance to long-term drought stress. DOI: DOI 10.1007/s11103-008-9412-7. Note: institution: Outside IRRI Number of accession(s) cited: 3
Tomoyuki Furuta, Motoyuki Ashikari, Kshirod K. Jena, Kazuyuki Doi and Stefan Reuscher. 2017. Adapting genotyping-by-sequencing for rice F2 populations. DOI: https://doi.org/10.1534/g3.116.038190. Note: institution: IRRI Number of accession(s) cited: 1
Victoria C. Lapitan, Edilberto D. Redo�a, Toshinori Abe, and Darshan S. Brar. 2009. Mapping of Quantitative Trait Loci Using a Doubled-Haploid Population from the Cross of Indica and Japonica Cultivars of Rice. DOI: DOI: 10.2135/cropsci2008.11.0655. Note: institution: IRRI Number of accession(s) cited: 2
Vishnu Varthini Nachimuthu, Raveendran Muthurajan, Sudhakar Duraialaguraja, Rajeswari Sivakami, Balaji Aravindhan Pandian, Govinthraj Ponniah, Karthika Gunasekaran, Manonmani Swaminathan, Suji K K and Robin Sabariappan. 2015. Analysis of Population Structure and Genetic Diversity in Rice Germplasm Using SSR Markers: An Initiative Towards Association Mapping of Agronomic Traits in Oryza Sativa. DOI: DOI 10.1186/s12284-015-0062-5. Note: institution: IRRI Number of accession(s) cited: 22
Wei Qian, Song Ge and De-yuan Hong. 2004. Genetic diversity in accessions of wild rice Oryza granulata from South and Southeast Asia. DOI: DOI 10.1007/s10722-004-6691-y. Note: institution: Outside IRRI Number of accession(s) cited: 19
Xianjin Qiu, Yunlong Pang, Zhihua Yuan, Danying Xing, Jianlong Xu, Michael Dingkuhn, Zhikang Li and Guoyou Ye. 2015. Genome-Wide Association Study of Grain Appearance and Milling Quality in a Worldwide Collection of Indica Rice Germplasm. DOI: https://doi.org/10.1371/journal.pone.0145577. Note: institution: IRRI Number of accession(s) cited: 272
Xinyou Yin, Martin J. Kropff and Jan Goudriaan. 1996. Differential Effects of Day and Night Temperature on Development to Flowering in Rice. DOI: https://doi.org/10.1006/anbo.1996.0024. Note: institution: IRRI Number of accession(s) cited: 19
Y. Gong, T. Borromeo and B.-R. Lu. 2000. A biosystematic study of the Oryza meyeriana complex (Poaceae). DOI: http://dx.doi.org/10.1007/BF00986339. Note: institution: IRRI Number of accession(s) cited: 4
Yang Wang, Weihua Jiang, Hongmei Liu, Ya Zeng, Bo Du, Lili Zhu, Guangcun He and Rongzhi Chen. 2017. Marker assisted pyramiding of Bph6 and Bph9 into elite restorer line 93�11 and development of functional marker for Bph9. DOI: DOI 10.1186/s12284-017-0194-x. Note: institution: Outside IRRI Number of accession(s) cited: 5
Yibo Li, Chuchuan Fan, Yongzhong Xing, Yunhe Jiang, Lijun Luo, Liang Sun, Di Shao, Chunjue Xu, Xianghua Li, Jinghua Xiao, Yuqing He amd Qifa Zhang. 2011. Natural variation in GS5 plays an important role in regulating grain size and yield in rice. DOI: doi:10.1038/ng.977. Note: institution: Outside IRRI Number of accession(s) cited: 1
Yibo Li, Chuchuan Fan, Yongzhong Xing, Yunhe Jiang, Lijun Luo, Liang Sun, Di Shao, Chunjue Xu, Xianghua Li, Jinghua Xiao, Yuqing He and Qifa Zhang. 2011. Natural variation in GS5 plays an important role in regulating grain size and yield in rice. DOI: doi:10.1038/ng.977. Note: institution: Outside IRRI Number of accession(s) cited: 14
Yong Zhou, Dmytro Chebotarov, Dave Kudrna, Victor Llaca, Seunghee Lee, Shanmugam Rajasekar, Nahed Mohammed, Noor Al-Bader, Chandler Sobel-Sorenson, Praveena Parakkal, Lady Johanna Arbelaez, Natalia Franco, Nickolai Alexandrov, N. Ruaraidh Sackville Hamilton, Hei Leung, Ramil Mauleon, Mathias Lorieux, Andrea Zuccolo, Kenneth McNally, Jianwei Zhang and Rod A. Wing. 2020. A platinum standard pan-genome resource that represents the population structure of Asian rice. DOI: https://doi.org/10.1038/s41597-020-0438-2. Note: institution: IRRI Number of accession(s) cited: 10
Yoo-Jin Lee, Michael J. Thomson and Joong Hyoun Chin. 2014. Application of indica�japonica singlenucleotide polymorphism markers for diversity analysis of Oryza AA genome species. DOI: doi:10.1017/S1479262114000215. Note: institution: IRRI Number of accession(s) cited: 82
Yoshitaka Kanaoka, Daichi Kuniyoshi, Eri Inada, Yohei Koide, Yoshihiro Okamoto, Hideshi Yasui and Yuji Kishima. 2018. Anther culture in rice proportionally rescues microspores according to gametophytic gene efect and enhances genetic study of hybrid sterility. DOI: https://doi.org/10.1186/s13007-018-0370-z. Note: institution: Outside IRRI Number of accession(s) cited: 2
Yuji Shibata, Rogelio C. Cabunagan, Pepito Q. Cabauatan and Il-Ryong Choi. 2007. Characterization of Oryza rufipogon�Derived Resistance to Tungro Disease in Rice. DOI: DOI: 10.1094/PDIS-91-11-1386. Note: institution: IRRI Number of accession(s) cited: 1
Yunbi Xu, Dominique This, Roman C. Pausch, Wendy M. Vonhof, Jason R. Coburn, Jonathan P. Comstock and Susan R. McCouch. 2009. Leaf-level water use efficiency determined by carbon isotope discrimination in rice seedlings: genetic variation associated with population structure and QTL mapping.. DOI: https://doi.org/10.1007/s00122-009-0963-z. Note: institution: Outside IRRI Number of accession(s) cited: 64
Yusaku Uga, Yoshimichi Fukuta, Ryo Ohsawa and Tatsuhito Fujimura. 2003. Variations of Floral Traits in Asian Cultivated Rice (Oryza sativa L.) and its Wild Relatives (O. rufipogon Griff). DOI: https://doi.org/10.1270/jsbbs.53.345. Note: institution: IRRI Number of accession(s) cited: 179
Z.W. Ranga, S.V.K. Jagadish, Q.M. Zhou, P.Q. Craufurd and S. Heuer. 2011. Effect of high temperature and water stress on pollen germination and spikelet fertility in rice. DOI: https://doi.org/10.1016/j.envexpbot.2010.08.009. Note: institution: IRRI Number of accession(s) cited: 5

Pedigree Citations

A N M Rubaiyath Bin Rahman and Jianhua Zhang. 2018. Preferential Geographic Distribution Pattern of Abiotic Stress Tolerant Rice. DOI: DOI 10.1186/s12284-018-0202-9. Note: institution: Outside IRRI Number of accession(s) cited: 13
A. K. Raymundo, A M Briones Jr, E Y Ardales, M T Perez, L C Fernandez, J E Leach, T W Mew, M A Ynalvez, C G McLaren and R J Nelson. 2007. Analysis of DNA Polymorphism and Virulence in Philippine Strains of Xanthomonas oryzae pv. Oryzicola. DOI: https://doi.org/10.1094/PDIS.1999.83.5.434. Note: institution: IRRI Number of accession(s) cited: 17
A.N. Kihupi, E.R. Angeles and G.S. Khush. 2001. Genetic analysis of resistance to bacterial blight, Xanthomonas oryzae pv. oryzae, in rice, Oryza sativa L.. DOI: https://doi.org/10.1023/A:1004004623439. Note: institution: IRRI Number of accession(s) cited: 40
Aditi Bhandari, J�r�me Bartholom�, Tuong-Vi Cao-Hamadoun, Nilima Kumari, Julien Frouin, Arvind Kumar and Nourollah Ahmadi. 2019. Selection of trait-specific markers and multi-environment models improve genomic predictive ability in rice. DOI: https://doi.org/10.1371/journal.pone.0208871. Note: institution: IRRI Number of accession(s) cited: 280
Aditi Bhandari, Nitika Sandhu, J�r�me Bartholome, Tuong-Vi Cao-Hamadoun, Nourollah Ahmadi, Nilima Kumari and Arvind Kumar. 2020. Genome-Wide Association Study for Yield and Yield Related Traits under Reproductive Stage Drought in a Diverse indica-aus Rice Panel. DOI: https://doi.org/10.1186/s12284-020-00406-3. Note: Couldn't find MTU 1010; institution: IRRI Number of accession(s) cited: 9
Ai Kitazumi, Isaiah C. M. Pabuayon, Hajime Ohyanagi, Masahiro Fujita, Bipush Osti, Matthew R. Shenton, Yusuke Kakei, Yasukazu Nakamura, Darshan S. Brar, Nori Kurata and Benildo G. de los Reyes. 2018. Potential of Oryza officinalis to augment the cold tolerance genetic mechanisms of Oryza sativa by network complementation. DOI: DOI:10.1038/s41598-018-34608-z. Note: institution: IRRI Number of accession(s) cited: 8
Alberto Casartelli, David Riewe, Hans Michael Hubberten, Thomas Altmann, Rainer Hoefgen and Sigrid Heuer. 2018. Exploring traditional aus-type rice for metabolites conferring drought tolerance. DOI: https://doi.org/10.1186/s12284-017-0189-7. Note: institution: Outside IRRI Number of accession(s) cited: 4
Amita B. Juliano, Ma. Elizabeth B. Naredo and M.T. Jackson. 1997. Taxonomic status of Oryza glumaepatula Steud. I. Comparative morphological studies of New World diploids and Asian AA genome species. DOI: https://doi.org/10.1023/A:1008682316449. Note: institution: IRRI Number of accession(s) cited: 65
Amita B. Juliano, Maria Elizabeth B. Naredo, Bao-Rong Lu and Michael T. Jackson. 2005. Genetic differentiation in Oryza meridionalis Ng based on molecular and crossability analyses. DOI: DOI:10.1007/s10722-005-2259-8. Note: institution: IRRI Number of accession(s) cited: 33
Ana L. Caicedo, Scott H. Williamson, Ryan D. Hernandez, Adam Boyko, Adi Fledel-Alon, Thomas L. York, Nicholas R. Polato, Kenneth M. Olsen, Rasmus Nielsen, Susan R. McCouch, Carlos D. Bustamante and Michael D. Purugganan. 2007. Genome-Wide Patterns of Nucleotide Polymorphism in Domesticated Rice. DOI: doi:10.1371/journal.pgen.0030163.eor. Note: institution: Outside IRRI Number of accession(s) cited: 59
Andrea Zuccolo, Jetty S. S. Ammiraju, HyeRan Kim, Abhijit Sanyal, Scott Jackson and Rod A. Wing. 2008. Rapid and Differential Proliferation of the Ty3-Gypsy LTR Retrotransposon Atlantys in the Genus Oryza. DOI: DOI 10.1007/s12284-008-9002-y. Note: institution: Outside IRRI Number of accession(s) cited: 11
Anthony J. Travis, Gareth J. Norton, Sutapa Datta, Ramendra Sarma, Tapash Dasgupta, Filipe L. Savio, Malcolm Macaulay, Peter E. Hedley, Kenneth L. McNally, Mahmud H. Sumon, M. Rafiqul Islam and Adam H. Price. 2015. Assessing the genetic diversity of rice originating from Bangladesh, Assam and West Bengal. DOI: https://doi.org/10.1186/s12284-015-0068-z. Note: institution: IRRI Number of accession(s) cited: 392
Arvinder Singh, Yogesh Kumar and N. K. Matta. 2018. Electrophoretic variation in seed proteins and interrelationships of species in the genus Oryza. DOI: doi.org/10.1007/s10722-018-0665-y. Note: institution: Outside IRRI Number of accession(s) cited: 17
B. Jyothi, B. Divya, L. V. Subba Rao, P. Laxmi Bhavani, P. Revathi, P. Raghuveer Rao, B. Rachana, G. Padmavathi, J. Aravind Kumar, C. Gireesh, M. S. Anantha, R. Abdul Fiyaz, C. Suvarna Rani and A. R. G. Ranganatha. 2018. New plant type trait characterization and development of core set among indica and tropical japonica genotypes of rice. DOI: https://doi.org/10.1017/S1479262118000084. Note: institution: Outside IRRI Number of accession(s) cited: 21
B. L. Hass, J. C. Pires, R. Porter, R. L. Phillips and S. A. Jackson. 2003. Comparative genetics at the gene and chromosome levels between rice (Oryza sativa) and wildrice (Zizania palustris). DOI: DOI 10.1007/s00122-003-1273-5. Note: institution: Outside IRRI Number of accession(s) cited: 4
B. P. M. Swamy, K. Kaladhar, K. Anuradha, Anil K. Batchu, T. Longvah and N. Sarla. 2018. QTL Analysis for Grain Iron and Zinc Concentrations in Two O. nivara Derived Backcross Populations. DOI: https://doi.org/10.1016/j.rsci.2018.06.003. Note: institution: IRRI Number of accession(s) cited: 2
B. P. Mallikarjuna Swamy, K. Kaladhar, N. Shobha Rani, G. S. V. Prasad, B. C. Viraktamath, G. Ashok Reddy, and N. Sarla. 2012. QTL Analysis for Grain Quality Traits in 2 BC2F2 Populations Derived from Crosses between Oryza sativa cv Swarna and 2 Accessions of O. nivara. DOI: https://doi.org/10.1093/jhered/esr145. Note: institution: IRRI Number of accession(s) cited: 2
B.J. Parsons, H.J. Newbury, M.T. Jackson and B.V. Ford-Lloyd. 1999. The genetic structure and conservation of aus, aman and boro rices from Bangladesh.. DOI: https://doi.org/10.1023/A:1008749532171. Note: institution: IRRI Number of accession(s) cited: 115
Balram Marathi, Joie Ramos, Sherry L. Hechanova, Rowena H. Oane and Kshirod K. Jena. 2014. SNP genotyping and characterization of pistil traits revealing a distinct phylogenetic relationship among the species of Oryza. DOI: DOI 10.1007/s10681-014-1213-2. Note: institution: IRRI Number of accession(s) cited: 43
Bao-Rong Lu, Ma. Elizabeth B. Naredo, Amita B. Juliano and Michael T. Jackson. 1998. Taxonomic status of Oryza glumaepatula Steud. III. Assessment of genomic affinity among AA genome species from the NewWorld, Asia, and Australia. DOI: https://doi.org/10.1023/A:1008686517357. Note: institution: IRRI Number of accession(s) cited: 25
Beatriz Andreo-Jimenez, Philippe Vandenkoornhuyse, Amandine L� Van, Arvid Heutinck1, Marie Duhamel, Niteen Kadam, Krishna Jagadish, Carolien Ruyter-Spira and Harro Bouwmeester. 2019. Plant host and drought shape the root associated fungal microbiota in rice. DOI: DOI 10.7717/peerj.7463. Note: Ten out of the 15 cultivars were selected to maximize the genetic variation using the SNP information available from a published study (Zhao et al., 2011). The five additional cultivars were selected based on their drought tolerance phenotype, and their information is available in IRGCIS database:; institution: IRRI Number of accession(s) cited: 15
Bernard O.Budot, Jaymee R. Encabo, Israel Dave V. Ambita, Genelou A. Atienza-Grande, Kouji Satoh, Hiroaki Kondoh, Victor J. Ulat, Ramil Mauleon, Shoshi Kikuchi and Il-Ryong Choi. 2014. Suppression of cell wall-related genes associated with stunting of Oryza glaberrima infected with Rice tungro spherical virus. DOI: https://doi.org/10.3389/fmicb.2014.00026. Note: institution: IRRI Number of accession(s) cited: 18
Beverley J. Parsons, H. John Newbury, Michael T. Jackson and Brian V. Ford-Lloyd. 1997. Contrasting genetic diversity relationships are revealed in rice (Oryza sativa L.) using different marker types. DOI: https://doi.org/10.1023/A:1009635721319. Note: institution: IRRI Number of accession(s) cited: 19
C. Bounphanousay, P. Jaisil, K.L. McNally, J. Sanitchon, N.R. Sackville Hamilton. 2008. Variation of Microsatellite Markers in a Collection of Lao's Black Glutinous Rice (Oryza sativa L.). DOI: DOI: 10.3923/ajps.2008.140.148. Note: institution: IRRI Number of accession(s) cited: 55
C. Martin, A. Juliano, H.J. Newbury, B-R. Lu, M.T. Jackson and B.V. Ford-Lloyd. 1996. The use of RAPD markers to facilitate the identification of Oryza species within a germplasm collection. DOI: https://doi.org/10.1023/A:1008678231467. Note: institution: IRRI Number of accession(s) cited: 92
C.-B. Li, D.-M. Zhang, S. Ge, B.-R. Lu and D.-Y. Hong. 2001. Identification of genome constitution of Oryza malampuzhaensis, O. minuta, and O. punctata by multicolor genomic in situ hybridization. DOI: https://doi.org/10.1007/s001220100563. Note: institution: IRRI Number of accession(s) cited: 8
Chitra Raghavan, Ma. Elizabeth B. Naredo, Hehe Wang, Genelou Atienza, Bin Liu, Fulin Qiu, Kenneth L. McNally and Hei Leung. 2006. Rapid method for detecting SNPs on agarose gels and its application in candidate gene mapping. DOI: https://doi.org/10.1007/s11032-006-9046-x. Note: institution: IRRI Number of accession(s) cited: 43
Chongrong Wang, Sheng Chen and Sibin Yu. 2010. Functional markers developed from multiple loci in GS3 for fine marker-assisted selection of grain length in rice. DOI: DOI 10.1007/s00122-010-1497-0. Note: institution: Outside IRRI Number of accession(s) cited: 60
Cong Shi, Wei Li, Qun-Jie Zhang, Yun Zhang, YanTong, Kui Li3, Yun-Long Liu and Li-ZhiGao. 1998. The draft genome sequence of an upland wild rice species, Oryza granulata. DOI: https://doi.org/10.1038/s41597-020-0470-2. Note: institution: Outside IRRI Number of accession(s) cited: 1
Courtney E. Jahn, John K. Mckay, Ramil Mauleon, Janice Stephens, Kenneth L. McNally, Daniel R. Bush, Hei Leung and Jan E. Leach. 2011. Genetic Variation in Biomass Traits among 20 Diverse Rice Varieties. DOI: DOI: 10.1104/pp.110.165654. Note: institution: IRRI Number of accession(s) cited: 19
Cuong D. Nguyen, Holden Verdeprado, Demeter Zita, Sachiyo Sanada-Morimura, Masaya Matsumura, Parminder S. Virk, Darshan S. Brar, Finbarr G. Horgan, Hideshi Yasui and Daisuke Fujita. 2019. The Development and Characterization of Near-Isogenic and Pyramided Lines Carrying Resistance Genes to Brown Planthopper with the Genetic Background of Japonica Rice (Oryza sativa L.). DOI: doi:10.3390/plants8110498. Note: institution: IRRI Number of accession(s) cited: 3
D.S. Kishor Jeonghwan Seo Joong Hyoun Chin Hee-Jong Koh. 2020. Evaluation of Whole-Genome Sequence, Genetic Diversity, and Agronomic Traits of Basmati Rice (Oryza sativa L.). DOI: https://doi.org/10.3389/fgene.2020.00086. Note: institution: Outside IRRI Number of accession(s) cited: 30
Daichi Kuniyoshi, Itaru Masuda, Yoshitaka Kanaoka, Yuki Shimazaki-Kishi, Yoshihiro Okamoto, Hideshi Yasui, Toshio Yamamoto, Kiyotaka Nagaki, Yoichiro Hoshino, Yohei Koide, Itsuro Takamure and Yuji Kishima. 2020. Diploid Male Gametes Circumvent Hybrid Sterility Between Asian and African Rice Species. DOI: https://doi.org/10.3389/fpls.2020.579305. Note: institution: Outside IRRI Number of accession(s) cited: 1
Dan Zhu, Houxiang Kang, Zhiqiang Li, Minghao Liu, Xiaoli Zhu, Yue Wang, Dan Wang, Zhilong Wang, Wende Liu and Guo-Liang Wang. 2016. A Genome-Wide Association Study of Field Resistance to Magnaporthe Oryzae in Rice. DOI: https://doi.org/10.1186/s12284-016-0116-3. Note: institution: Outside IRRI Number of accession(s) cited: 32
Dante L. Adorada, B. J. Stodart, C. Vera Cruz, G. Gregorio, I. Pangga, and G. J. Ash. 2012. Standardizing resistance screening to Pseudomonas fuscovaginae and evaluation of rice germplasm at seedling and adult plant growth stages. DOI: DOI 10.1007/s10681-012-0804-z. Note: institution: IRRI Number of accession(s) cited: 21
Diane R. Wang, Edward J. Wolfrum, Parminder Virk, Abdelbagi Ismail, Anthony J. Greenberg and Susan R. McCouch. 2016. Robust phenotyping strategies for evaluation of stem non-structural carbohydrates (NSC) in rice. DOI: doi:10.1093/jxb/erw375. Note: institution: IRRI Number of accession(s) cited: 2
E. M. Septiningsih, K. R. Trijatmiko, S. Moeljopawiro and S. R. McCouch. 2003. Identification of quantitative trait loci for grain quality in an advanced backcross population derived from the Oryza sativa variety IR64 and the wild relative O. rufipogon. DOI: https://doi.org/10.1007/s00122-003-1376-z. Note: institution: Outside IRRI Number of accession(s) cited: 1
Eug�nie H�brard, Agn�s Pinel-Galzi, Aderonke Oludare, Nils Poulicard, Jamel Aribi, Sandrine Fabre, Souley Issaka, C�dric Mariac, Alexis Dereeper, Laurence Albar, Drissa Silu� and Denis Fargette. 2018. Identification of a Hypervirulent Pathotype of Rice yellow mottle virus: A Threat to Genetic Resistance Deployment in West-Central Africa. DOI: https://doi.org/10.1094/PHYTO-05-17-0190-R. Note: institution: Outside IRRI Number of accession(s) cited: 3
Eung-Gi Jeong, Darshan S. Brar, Kyung-Ho Kang, Heung-Goo Hwang, Kshirod K. Jena, Ho-Yeong Kim, Sang-Nag Ahn, Gihwan Yi and Min-Hee Nam. 2005. Cytological Characterization of Interspecific Hybrids in Rice (Oryza sativa L.). Note: Couldn't find DOI; institution: IRRI Number of accession(s) cited: 4
F.R. NIAZI, I. DASGUPTA, J. SINGH, S. MATHUR and A. VARMA. 2004. Characterization of new strains in rice tungro Viruses. DOI: https://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.950.9800&rep=rep1&type=pdf. Note: couldn't find DOI; institution: Outside IRRI Number of accession(s) cited: 1
Fanmiao Wang, Toshisangba Longkumer, Sheryl C. Catausan, Carla Lenore F. Calumpang, Jeshurun A. Tarun, Jerome Cattin?Ortola, Takuma Ishizaki, Juan Pariasca Tanaka, Terry Rose, Matthias Wissuwa and Tobias Kretzschmar. 2018. Genome?wide association and gene validation studies for early root vigour to improve direct seeding of rice. DOI: DOI: 10.1111/pce.13400. Note: institution: IRRI Number of accession(s) cited: 307
Fengshan Liang, Qiyun Deng, Yueguang Wang, Yuedong Xiong, Demin Jin, Jiming Li and Bin Wang. 2004. Molecular marker-assisted selection for yield-enhancing genes in the progeny of �9311� O. rufipogon� using SSR. DOI: https://doi.org/10.1007/s10681-004-2560-1. Note: institution: Outside IRRI Number of accession(s) cited: 1
Finbarr G. Horgana, Maria-Liberty P. Almazan, Quynh Vu, Angelee Fame Ramal, Carmencita C. Bernal, Hideshi Yasui and Daisuke Fujita. 2018. Unanticipated benefits and potential ecological costs associated with pyramiding leafhopper resistance loci in rice. DOI: https://doi.org/10.1016/j.cropro.2018.09.013. Note: institution: IRRI Number of accession(s) cited: 2
Fiona R. Hay Rocel Valdez Jae-Sung Lee and Pompe C. Sta. Cruz. 2018. Seed longevity phenotyping: recommendations on research methodology. DOI: https://doi.org/10.1093/jxb/ery358. Note: institution: IRRI Number of accession(s) cited: 39
Fiona R. Hay, Flora de Guzman, David Ellis, Hazel Makahiya, Teresita Borromeo and N. Ruaraidh Sackville Hamilton. 2012. Viability of Oryza sativa L. seeds stored under genebank conditions for up to 30 years. DOI: DOI 10.1007/s10722-012-9833-7. Note: institution: IRRI Number of accession(s) cited: 78
Fiona R. Hay, Stephen Timple and Bert van Duijn. 2015. Can chlorophyll fluorescence be used to determine the optimal time to harvest rice seeds for long-term genebank storage?. DOI: DOI: 10.1017/S0960258515000082. Note: institution: IRRI Number of accession(s) cited: 20
G. Aluko, C. Martinez, J. Tohme, C. Castano, C. Bergman and J. H. Oard. 2004. QTL mapping of grain quality traits from the interspecific cross Oryza sativa � O. glaberrima. DOI: DOI 10.1007/s00122-004-1668-y. Note: institution: Outside IRRI Number of accession(s) cited: 1
G. C. Eizenga, H. A. Agrama, F. N. Lee and Y. Jia. 2008. Exploring genetic diversity and potential novel disease resistance genes in a collection of rice (Oryza spp.) wild relatives. DOI: https://doi.org/10.1007/s10722-008-9345-7. Note: institution: Outside IRRI Number of accession(s) cited: 28
G. Haritha, B.P.M. Swamy, M.L. Naik, B. Jyothi, B. Divya, S. Malathi and N. Sarla. 2018. Yield Traits and Associated Marker Segregation in Elite Introgression Lines Derived from O. sativa � O. nivara. DOI: https://doi.org/10.1016/j.rsci.2017.11.001. Note: institution: IRRI Number of accession(s) cited: 1
G. Haritha, B.P.M. Swamy, M.L. Naik, B. Jyothi, B. Divya, S. Malathi and N. Sarla. 2018. Yield Traits and Associated Marker Segregation in Elite Introgression Lines Derived from O. sativa � O. nivara. DOI: https://doi.org/10.1016/j.rsci.2017.11.001. Note: institution: IRRI Number of accession(s) cited: 1
G. Mohammadi-Nejad, A. Arzani, A. M. Rezai, R.K. Singh and G. B. Gregorio. 2008. Assessment of rice genotypes for salt tolerance using microsatellite markers associated with the saltol QTL. Note: Couldn't find DOI; institution: IRRI Number of accession(s) cited: 9
G. Ramkumar, G. D. Prahalada, Sherry Lou Hechanova, Ricky Vinarao and Kshirod K. Jena. 2015. Development and validation of SNP-based functional codominant markers for two major disease resistance genes in rice (O. sativa L.). DOI: DOI 10.1007/s11032-015-0323-4. Note: institution: IRRI Number of accession(s) cited: 260
G. Ramkumar, M. S. Madhav, S. J. S. Rama Devi, B. Makanth, M. K. Pandey, M. S. Prasad, R. M. Sundaram, B. C. Viraktamath and V. Ravindra Babu. 2016. Identification and validation of novel alleles of rice blast resistant gene Pi54, and analysis of their nucleotide diversity in landraces and wild Oryza species. DOI: https://doi.org/10.1007/s10681-016-1666-6. Note: institution: Outside IRRI Number of accession(s) cited: 103
Gandhimani Ramkumar, G.D. Prahalada, Sherry Lou Hechanova, Sung-Ryul Kim and Kshirod K. Jena. 2016. Exploring genetic diversity of rice cultivars for the presence of brown planthopper (BPH) resistance genes and development of SNP marker for Bph190. DOI: doi:10.1111/pbr.12365. Note: institution: IRRI Number of accession(s) cited: 260
Gareth J. Norton, Anthony J. Travis, Alex Douglas, Susan Fairley, Eduardo De Paiva Alves, Panthita Ruang-areerate, Ma. Elizabeth B. Naredo, Kenneth L. McNally, Mahmud Hossain, Md. Rafiqul Islam and Adam H. Price. 2018. Genome Wide Association Mapping of Grain and Straw Biomass Traits in the Rice Bengal and Assam Aus Panel (BAAP) Grown Under Alternate Wetting and Drying and Permanently Flooded Irrigation. DOI: https://doi.org/10.3389/fpls.2018.01223. Note: institution: IRRI Number of accession(s) cited: 48
Geoffrey Onaga, James Egdane, Richard Edema and Ismail Abdelbagi. 2013. Morphological and genetic diversity analysis of rice accessions (Oryza sativa L.) differing in iron toxicity tolerance. DOI: https://doi.org/10.1007/s12892-012-0104-0. Note: institution: IRRI Number of accession(s) cited: 7
George Thomas, Latha Joseph, George Varghese, K. Kalyanaraman, Philomena Kuriachan and M.R. Das. 2001. Discrimination between Oryza malampuzhaensis Krish. et Chand. and Oryza officinalis Wall ex Watt based on RAPD markers and morphological traits. DOI: https://doi.org/10.1023/A:1012602516236. Note: institution: Outside IRRI Number of accession(s) cited: 5
Gerbert Sylvestre Dossa, Ricardo Oliva, Edgar Maiss, Casiana Vera Cruz and Kerstin Wydra. 2017. High Temperature Enhances the Resistance of Cultivated African Rice, Oryza glaberrima, to Bacterial Blight. DOI: https://doi.org/10.1094/PDIS-05-15-0536-RE. Note: institution: IRRI Number of accession(s) cited: 16
Gui Xiao, Frances Nikki Borja, Ramil Mauleon, Jonas Padilla, Mary Jeanie Telebanco-Yanoria, Jianxia Yang, Guodong Lu, Maribel Dionisio-Sese and Bo Zhou. 2017. Identification of resistant germplasm containing novel resistance genes at or tightly linked to the Pi2/9 locus conferring broad-spectrum resistance against rice blast. DOI: https://doi 10.1186/s12284-017-0176-z. Note: institution: IRRI Number of accession(s) cited: 405
Gustave Djedatin, Marie-No�lle Ndjiondjop, Thierry Mathieu, Casiana M. Vera Cruz, Ambaliou Sanni, Alain Ghesqui�re and Val�rie Verdier. 2011. Evaluation of African Cultivated Rice Oryza glaberrima for Resistance to Bacterial Blight. DOI: doi:10.1094/PDIS-08-10-0558. Note: institution: IRRI Number of accession(s) cited: 2
H.H. Yan, G.Q. Liu, Z.K. Cheng, X.B. Li, G.Z. Liu and L.H. Zhu. 2002. A genome-specific repetitive DNA sequence from Oryza eichingeri: characterization, localization, and introgression to O. sativa. DOI: https://doi.org/10.1007/s001220100766. Note: institution: Outside IRRI Number of accession(s) cited: 12
Hei Leung, Chitra Raghavan, Bo Zhou, Ricardo Oliva, Il Ryong Choi, Vanica Lacorte, Mona Liza Jubay, Casiana Vera Cruz, Glenn Gregorio, Rakesh Kumar Singh, Victor Jun Ulat, Frances Nikki Borja, Ramil Mauleon, Nickolai N. Alexandrov, Kenneth L. McNally and Ruaraidh Sackville Hamilton. 2015. Allele mining and enhanced genetic recombination for rice breeding. DOI: DOI 10.1186/s12284-015-0069-y. Note: institution: IRRI Number of accession(s) cited: 2
HyunJung Kim, Eung Gi Jeong, Sang-Nag Ahn, Jeffrey Doyle, Namrata Singh, Anthony J Greenberg, Yong Jae Won and Susan R McCouch. 2014. Nuclear and chloroplast diversity and phenotypic distribution of rice (Oryza sativa L.) germplasm from the democratic people�s republic of Korea (DPRK; North Korea). DOI: https://doi.org/10.1186/s12284-014-0007-4. Note: institution: Outside IRRI Number of accession(s) cited: 1
HyunJung Kim, Janelle Jung, Namrata Singh, Anthony Greenberg, Jeff J. Doyle, Wricha Tyagi, Jong-Wook Chung, Jennifer Kimball, Ruaraidh Sackville Hamilton and Susan R. McCouch. 2016. Population Dynamics Among six Major Groups of the Oryza rufipogon Species Complex, Wild Relative of Cultivated Asian Rice. DOI: DOI 10.1186/s12284-016-0119-0. Note: institution: IRRI Number of accession(s) cited: 314
Ichiro Nakamura, Seiichi Murayama, Satoshi Tobita, Bui Ba Bong, Seiji Yanagihara, Yukio Islb.imine and Yoshinobu Kawamitsu. 2015. Effect of NaCI on the Photosynthesis, Water Relations and Free Proline Acculnulation in the Wild Oryza Species. DOI: https://doi.org/10.1626/pps.5.305. Note: institution: IRRI Number of accession(s) cited: 2
In�s S. Piresa, S�nia Negrao, M. Margarida Oliveira and Michael D. Purugganan. 2015. Comprehensive phenotypic analysis of rice (Oryza sativa) response to salinity stress. DOI: https://doi.org/10.1111/ppl.12356. Note: institution: Outside IRRI Number of accession(s) cited: 51
Issa Wonni, Gustave Djedatin, L�onard Ou�draogo and Val�rie Verdier. 2015. Evaluation of Rice Germplasm against Bacterial Leaf Streak Disease Reveals Sources of Resistance in African Varieties. DOI: http://dx.doi.org/10.4172/2157-7471.1000312. Note: institution: Outside IRRI Number of accession(s) cited: 2
J. Xu, S. V. Constantino, G. Magpantay, J. Bennett, S. Sarkarung and N. Huang. 1997. Classification of rice germplasm. II. Discrimination of indica from japonica via analysis of amplicon length polymorphisms. DOI: https://doi.org/10.1007/s002990050457. Note: institution: IRRI Number of accession(s) cited: 103
J. Zhu, M. D. Gale, S. Quarrie, M. T. Jackson and G. J. Bryan. 1997. AFLP markers for the study of rice biodiversity. DOI: https://doi.org/10.1007/s001220050778. Note: institution: IRRI Number of accession(s) cited: 57
Jae Young Choi, Maricris Zaidem, Rafal Gutaker, Katherine Dorph, Rakesh Kumar Singh and Michael D. Purugganan. 2019. The complex geography of domestication of the African rice Oryza glaberrima. DOI: https://doi.org/10.1371/journal.pgen.1007414. Note: institution: IRRI Number of accession(s) cited: 196
Jae Young Choi, Zoe N. Lye, Simon C. Groen, Xiaoguang Dai, Priyesh Rughani, Sophie Zaaijer, Eoghan D. Harrington, Sissel Juul and Michael D. Purugganan. 2020. Nanopore sequencing-based genome assembly and evolutionary genomics of circum-basmati rice. DOI: DOI 10.1186/s13059-020-1938-2. Note: institution: Outside IRRI Number of accession(s) cited: 2
Jae-Sung Lee, Jieun Kwak, Mi-Ra Yoon, Jeom-Sig Lee and Fiona R. Hay. 2017. Contrasting tocol ratios associated with seed longevity in rice variety groups. DOI: doi:10.1017/S0960258517000265. Note: institution: IRRI Number of accession(s) cited: 20
Jae-Sung Lee, Matthias Wissuwa, Oscar B. Zamora and Abdelbagi M. Ismail. 2018. Novel Sources of aus Rice for Zinc Deficiency Tolerance Identified Through Association Analysis Using High-Density SNP Array. DOI: https://doi.org/10.1016/j.rsci.2018.08.004. Note: institution: IRRI Number of accession(s) cited: 108
Jae-Sung Lee, Tobias Kretzschmar, Kenneth L. McNally, Abdel M. Ismail, Pompe C. Sta. Cruz, N. Ruaraidh Sackville Hamilton, Fiona R. Hay, Myrish Pacleb, Rocel Valdez and Marlina Velasco-Punzalan. 2019. Variation in seed longevity among diverse Indica rice varieties. DOI: doi: 10.1093/aob/mcz093. Note: institution: IRRI Number of accession(s) cited: 299
James Silva, Brian Scheffler, Yamid Sanabria, Christian De Guzman, Dominique Galam, Andrew Farmer, Jimmy Woodward, Gregory May and James Oard. 2011. Identification of candidate genes in rice for resistance to sheath blight disease by whole genome sequencing. DOI: DOI 10.1007/s00122-011-1687-4. Note: institution: Outside IRRI Number of accession(s) cited: 2
Jason P. Lond, Yu-Chung Chiang, Kuo-Hsiang Hung, Tzen-Yuh Chiang and Barbara A. Schaal. 2006. Phylogeography of Asian wild rice, Oryza rufipogon, reveals multiple independent domestications of cultivated rice, Oryza sativa. DOI: https://doi.org/10.1073/pnas.0603152103. Note: institution: Outside IRRI Number of accession(s) cited: 225
Jian Zhang, Kai Chen, Yunlong Pang, Shahzad Amir Naveed, Xiuqin Zhao, Xiaoqian Wang, Yun Wang, Michael Dingkuhn, Julie Pasuquin, Zhikang Li and Jianlong Xu. 2017. QTL mapping and candidate gene analysis of ferrous iron and zinc toxicity tolerance at seedling stage in rice by genome-wide association study. DOI: DOI 10.1186/s12864-017-4221-5. Note: institution: IRRI Number of accession(s) cited: 222
Jinbin Li, Yiding Sun, Hui Liu, Yanyan Wang, Yulin Jia and Minghui Xu. 2013. Genetic variation and evolution of the Pit blast resistance locus in rice. DOI: https://doi.org/10.1007/s10722-013-0051-8. Note: institution: Outside IRRI Number of accession(s) cited: 31
Jing Tan, Niranjan Baisakh, Norman Oliva, Vilas Parkhi, Mayank Rai, Lina Torrizo, Karabi Datta and Swapan K. Datta. 2005. The screening of rice germplasm, including those transgenic rice lines which accumulate b carotene in their polished seeds, for their carotenoid profile. DOI: https://doi.org/10.1111/j.1365-2621.2005.00971.x. Note: institution: IRRI Number of accession(s) cited: 74
Jinhua Xiao, Jiming Li, Silvana Grandillo, Sang Nag Ahn, Longping Yuan, Steven D. Tanksley and Susan R. McCouch. 1998. Identification of Trait-Improving Quantitative Trait Loci Alleles From a Wild Rice Relative, Oryza rufipogon. DOI: PMCID: PMC1460369 (DOI not cited). Note: institution: Outside IRRI Number of accession(s) cited: 1
John Damien Platten, James A Egdane and Abdelbagi M Ismail. 2013. Salinity tolerance, Na+ exclusion and allele mining of HKT1;5 in Oryza sativa and O. glaberrima: many sources, many genes, one mechanism?. DOI: doi:10.1186/1471-2229-13-32. Note: institution: IRRI Number of accession(s) cited: 185
John N. Ferguson, Lorna McAusland, Kellie E. Smith, Adam H. Price, Zoe A. Wilson and Erik H. Murchie. 2010. Rapid temperature responses of photosystem II ef?ciencyforecast genotypic variation in rice vegetative heat tolerance. DOI: https://doi.org/10.1111/tpj.14956. Note: institution: Outside IRRI Number of accession(s) cited: 2
Joie M. Ramos, Tomoyuki Furuta, Kanako Uehara, Niwa Chihiro, Rosalyn B. Angeles-Shim, Junghyun Shim, Darshan S. Brar, Motoyuki Ashikari and Kshirod K. Jena. 2016. Development of chromosome segment substitution lines (CSSLs) of Oryza longistaminata A. Chev. & R�hr in the background of the elite japonica rice cultivar, Taichung 65 and their evaluation for yield traits. DOI: https://doi.org/10.1007/s10681-016-1685-3. Note: institution: IRRI Number of accession(s) cited: 2
Jolly Chatterjee, Vivek Thakur, Robert Nepomuceno, Robert A. Coe, Jacqueline Dionora, Abigail Elmido-Mabilangan, Abraham Darius Llave, Anna Mae Delos Reyes, Apollo Neil Monroy, Irma Canicosa, Anindya Bandyopadhyay, Kshirod K. Jena, Darshan S. Brar and William Paul Quick. 2020. Natural Diversity in Stomatal Features of Cultivated and Wild Oryza Species. DOI: https://doi.org/10.1186/s12284-020-00417-0. Note: institution: IRRI Number of accession(s) cited: 21
Joong Hyoun Chin, Yoo-Jin Lee, Wenzhu Jiang, Hee-Jong Koh and Michael J. Thomson. 2016. Characterization of indica�japonica subspecies-specific InDel loci in wild relatives of rice (Oryza sativa L. subsp. indica Kato and subsp. japonica Kato). DOI: DOI 10.1007/s10722-016-0368-1. Note: institution: IRRI Number of accession(s) cited: 31
Joshua C. Stein, Yeisoo Yu, Dario Copetti, Derrick J. Zwick, Li Zhang, Chengjun Zhang, Kapeel Chougule, Dongying Gao, Aiko Iwata, Jose Luis Goicoechea, Sharon Wei, Jun Wang, Yi Liao, Muhua Wang, Julie Jacquemin, Claude Becker, Dave Kudrna and Jianwei . 2018. Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza. DOI: https://doi.org/10.1038/s41588-018-0040-0. Note: institution: IRRI Number of accession(s) cited: 6
Juan Pariasca-Tanaka, Mathias Lorieux, Chunlin He, Susan McCouch, Michael J. Thomson and Matthias Wissuwa. 2014. Development of a SNP genotyping panel for detecting polymorphisms in Oryza glaberrima/O. sativa interspecific crosses. DOI: DOI 10.1007/s10681-014-1183-4. Note: institution: IRRI Number of accession(s) cited: 7
K. C. Park, N. H. Kim, Y. S. Cho, K. H. Kang, J. K. Lee and N.-S. Kim. 2003. Genetic variations of AA genome Oryza species measured by MITE-AFLP. DOI: https://doi.org/10.1007/s00122-003-1252-x. Note: institution: Outside IRRI Number of accession(s) cited: 55
K. J. Whitehouse, F. R. Hay and R. H. Ellis. 2015. Increases in the longevity of desiccation-phase developing rice seeds: response to high temperature drying depends on harvest moisture content. DOI: doi:10.1093/aob/mcv091. Note: institution: IRRI Number of accession(s) cited: 20
K. N. Ta, H. Adam, Y. M. Staedler, J. Sch�nenberger, T. Harrop, J. Tregear, N. V. Do, P. Gantet, A. Ghesqui�re and S. Jouannic. 2017. Differences in meristem size and expression of branching genes are associated with variation in panicle phenotype in wild and domesticated African rice. DOI: DOI 10.1186/s13227-017-0065-y. Note: institution: Outside IRRI Number of accession(s) cited: 2
K. Nemoto, Y. Ukai, D.-Q. Tang, Y. Kasai and M. Morita. 2004. Inheritance of early elongation ability in floating rice revealed by diallel and QTL analyses. DOI: DOI 10.1007/s00122-004-1600-5. Note: institution: Outside IRRI Number of accession(s) cited: 3
K.J. Whitehouse, F.R. Hay and R.H. Ellis. 2018. Improvement in rice seed storage longevity from high-temperature drying is a consistent positive function of harvest moisture content above a critical value. DOI: https://doi.org/ 10.1017/S0960258518000211. Note: institution: IRRI Number of accession(s) cited: 20
Katherine J. Whitehouse, Fiona R. Hay and Richard H. Ellis. 2017. High-temperature stress during drying improves subsequent rice (Oryza sativa L.) seed longevity. DOI: doi:10.1017/S0960258517000277. Note: institution: IRRI Number of accession(s) cited: 1
Kenneth L. McNally, Kevin L. Childs, Regina Bohnert, Rebecca M. Davidson, Keyan Zhao, Victor J. Ulat, Georg Zeller, Richard M. Clark, Douglas R. Hoen, Thomas E. Bureau, Renee Stokowski, Dennis G. Ballinger, Kelly A. Frazer, David R. Cox, Badri Padhukasahasram, Carlos D. Bustamante, Detlef Weigel, David J. Mackill, Richard M. Bruskiewich, Gunnar Ratsch, C. Robin Buell, Hei Leung and Jan E. Leach. 2009. Genomewide SNP variation reveals relationships among landraces and modern varieties of rice. DOI: https://doi.org/10.1073/pnas.0900992106. Note: institution: IRRI Number of accession(s) cited: 11
Kenneth L. McNally, Richard Bruskiewich, David Mackill, C. Robin Buell, Jan E. Leach and Hei Leung. 2006. Sequencing Multiple and Diverse Rice Varieties. Connecting Whole-Genome Variation with Phenotypes. DOI: doi/10.1104/pp.106.077313. Note: institution: IRRI Number of accession(s) cited: 17
Khin Myo Myint, Brigitte Courtois, Ange-Marie Risterucci, Julien Frouin, Khin Soe, Khin Maung Thet, Apichart Vanavichit and Jean-Christophe Glaszmann. 2012. Specific patterns of genetic diversity among aromatic rice varieties in Myanmar. DOI: https://doi.org/10.1186/1939-8433-5-20. Note: institution: IRRI Number of accession(s) cited: 76
Khin Myo Myint, Siwaret Arikit, Samart Wanchana, Tadashi Yoshihashi, Kiattawee Choowongkomon and Apichart Vanavichit. 2012. A PCR-based marker for a locus conferring the aroma in Myanmar rice (Oryza sativa L.). DOI: DOI: 10.1007/s00122-012-1880-0. Note: institution: IRRI Number of accession(s) cited: 3
Kristie A. Mather, Jeanmaire Molina, Jonathan M. Flowers, Samara Rubinstein, Brad L. Rauh, Amy Lawton-Rauh, Ana L. Caicedo, Kenneth L. Mcnally and Michael D. Purugganan. 2010. Migration, isolation and hybridization in island crop populations: the case of Madagascar rice. DOI: doi: 10.1111/j.1365-294X.2010.04845.x. Note: institution: IRRI Number of accession(s) cited: 111
Kshirod K. Jena, Ma. LaRue E. Ballesfin and Ricky B. Vinarao. 2016. Development of Oryza sativa L. by Oryza punctata Kotschy ex Steud. monosomic addition lines with high value traits by interspecific hybridization. DOI: https://doi.org/10.1007/s00122-016-2745-8. Note: institution: IRRI Number of accession(s) cited: 1
Kuljit K. Cheema, Navjit K. Grewal, Yogesh Vikal, Rajiv Sharma, Jagjeet Lore, Aparna Das, Dharminder Bhatia, Ritu Mahajan, Vikas Gupta, Tajinder S. Bharaj, Kuldeep Singh . 2008. A novel bacterial blight resistance gene from Oryza nivara mapped to 38 kb region on chromosome 4L and transferred to Oryza sativa L. DOI: https://doi.org/10.1017/S0016672308009786. Note: institution: Outside IRRI Number of accession(s) cited: 1
Kumar Vasudevan, Casiana M. Vera Cruz, Wilhelm Gruissem and Navreet K. Bhullar. 2016. Geographically Distinct and Domain-Specific Sequence Variations in the Alleles of Rice Blast Resistance Gene Pib. DOI: doi: 10.3389/fpls.2016.00915. Note: institution: IRRI Number of accession(s) cited: 347
Kumari Neelam, Shiwali Thakur, Neha, Inderjit S. Yadav, Kishor Kumar, Salwinder S. Dhaliwal and Kuldeep Singh. 2017. Novel Alleles of Phosphorus-Starvation Tolerance 1 Gene (PSTOL1) from Oryza rufipogon Confers High Phosphorus Uptake Efficiency. DOI: https://doi.org/10.3389/fpls.2017.00509. Note: institution: Outside IRRI Number of accession(s) cited: 57
L. Joseph, P. Kuriachan and G. Thomas. 2007. Is Oryza malampuzhaensis Krish. et Chand. (Poaceae) a valid species? Evidence from morphological and molecular analyses. DOI: DOI 10.1007/s00606-007-0606-2. Note: institution: Outside IRRI Number of accession(s) cited: 14
L. Liu, R. Lafitte and D. Guan. 2004. Wild Oryza species as potential sources of drought-adaptive traits. DOI: https://doi.org/10.1023/B:EUPH.0000046801.27042.14. Note: institution: IRRI Number of accession(s) cited: 9
Lee, K. S., Rasabandith, S., Angeles, E. R., and Khush G. S. 2007. Inheritance of Resistance to Bacterial Blight in 21 Cultivars of Rice. DOI: https://doi.org/10.1094/PHYTO.2003.93.2.147. Note: institution: IRRI Number of accession(s) cited: 21
Liana G. Acevedo?Siaca, Robert Coe, Yu Wang, Johannes Kromdijk, W. Paul Quick and Stephen P. Long. 2020. Variation in photosynthetic induction between rice accessions and its potential for improving productivity.. DOI: doi: 10.1111/nph.16454. Note: institution: IRRI Number of accession(s) cited: 14
M. CHATURVEDI, ?. DATTA and P. K. K. NAIR. 2009. Pollen morphology of Oryza (Poaceae). DOI: DOI: 10.1080/00173139809362647. Note: institution: Outside IRRI Number of accession(s) cited: 15
M. E. B. NAREDO, AMIT A B. JULIANO, B. R. LU, FLORA DE GUZMAN and M. T. JACKSON. 1998. Responses to seed dormancy-breaking treatments in rice species (Oryza L.). DOI: https://mikejackson1948.files.wordpress.com/2015/07/64.pdf. Note: Couldn't find DOI; institution: IRRI Number of accession(s) cited: 16
M. Liakat Ali, Paul L. Sanchez, Si-bin Yu, Mathias Lorieux and Georgia C. Eizenga. 2000. Chromosome Segment Substitution Lines: A Powerful Tool for the Introgression of Valuable Genes from Oryza Wild Species into Cultivated Rice (O. sativa). DOI: DOI 10.1007/s12284-010-9058-3. Note: institution: Outside IRRI Number of accession(s) cited: 20
M.R. Islam, R.K. Singh, M.A. Salam, L. Hassan and G.B Gregorio. 2008. Molecular Diversity of Stress Tolerant Rice Genotypes using SSR Markers. Note: Couldn't find DOI; institution: IRRI Number of accession(s) cited: 6
Ma. Elizabeth B. Naredo, Amita B. Juliano, Bao Rong Lu and Michael T. Jackson. 1998. Taxonomic status of Oryza glumaepatula Steud. II. Hybridization between NewWorld diploids and AA genome species from Asia and Australia. DOI: https://doi.org/10.1023/A:1008634400519. Note: institution: IRRI Number of accession(s) cited: 20
Margaretha A. Veltman, Jonathan M. Flowers Tinde R. van Andel M. Eric Schranz. 2019. Origins and geographic diversification of African rice (Oryza glaberrima) . DOI: https://doi.org/ 10.1371/journal.pone.0203508. Note: institution: Outside IRRI Number of accession(s) cited: 98
Maria Celeste N. Banaticla-Hilario, Kenneth L. McNally, Ronald G. van den Berg and Nigel Ruaraidh Sackville Hamilton. 2013. Crossability patterns within and among Oryza series Sativae species from Asia and Australia. DOI: DOI 10.1007/s10722-013-9965-4. Note: institution: IRRI Number of accession(s) cited: 15
Maria Celeste N. Banaticla-Hilario, Ronald G. van den Berg, Nigel Ruaraidh Sackville Hamilton and Kenneth L. McNally. 2013. Local differentiation amidst extensive allele sharing in Oryza nivara and O. rufipogon. DOI: https://doi: 10.1002/ece3.689. Note: institution: IRRI Number of accession(s) cited: 125
Maria Elizabeth B. Naredo, Amita B. Juliano, Bao-Rong Lu and Michael T. Jackson. 2003. The taxonomic status of the wild rice species Oryza ridleyi Hook. f. and O. longiglumis Jansen (Ser. Ridleyanae Sharma et Shastry) from Southeast Asia. DOI: https://doi.org/10.1023/A:1023958130087. Note: institution: IRRI Number of accession(s) cited: 15
Maria Elizabeth Boncodin Naredo, Sheila Mae Quilloy Mercado, Maria Celeste Naynes Banaticla-Hilario, Myrricar Loren Berdos, Mario Alcantara Rodriguez, Kenneth Lee McNally and Ruaraidh Sackville Hamilton. 2016. Genetic diversity patterns in ex situ collections of Oryza officinalis Wall. ex G. Watt revealed by morphological and microsatellite markers. DOI: https://doi.org/10.1007/s10722-016-0396-x. Note: institution: IRRI Number of accession(s) cited: 71
Mayuri Munasinghe and Adam H. Price. 2016. Genetic and root phenotype diversity in Sri Lankan rice landraces may be related to drought resistance. DOI: DOI 10.1186/s12284-016-0092-7. Note: institution: Outside IRRI Number of accession(s) cited: 134
Md Kamal Hossain, Ong Shin Tze, Kalaivani Nadarajah, Kshirod Jena, Md Atiqur Rahman Bhuiyan and Wickneswari Ratnam. 2014. Identification and validation of sheath blight resistance in rice (Oryza sativa L.) cultivars against Rhizoctonia solani. DOI: DOI: 10.1080/07060661.2014.970577. Note: institution: IRRI Number of accession(s) cited: 4
Michael Adsetts Edberg Hansen, Fiona R. Hay and Jens Michael Carstensen. 2015. A virtual seed file: the use of multispectral image analysis in the management of genebank seed accessions. DOI: https://doi.org/10.1017/S1479262115000362. Note: institution: IRRI Number of accession(s) cited: 20
Michael J. Thomson, Endang M. Septiningsih, Fatimah Suwardjo, Tri J. Santoso, Tiur S. Silitonga and Susan R. McCouch. 2006. Genetic diversity analysis of traditional and improved Indonesian rice (Oryza sativa L.) germplasm using microsatellite markers. DOI: https://doi.org/10.1007/s00122-006-0457-1. Note: institution: IRRI Number of accession(s) cited: 3
Michael J. Thomson, Marjorie de Ocampo, James Egdane, M. Akhlasur Rahman, Andres Godwin Sajise, Dante L. Adorada, Ellen Tumimbang-Raiz, Eduardo Blumwald, Zeba I. Seraj, Rakesh K. Singh, Glenn B. Gregorio and Abdelbagi M. Ismail. 2010. Characterizing the Saltol Quantitative Trait Locus for Salinity Tolerance in Rice. DOI: DOI 10.1007/s12284-010-9053-8. Note: institution: IRRI Number of accession(s) cited: 7
Miriam D. Baltazar, John Carlos I. Ignacio, Michael J. Thomson, Abdelbagi M. Ismail, Merlyn S. Mendioro and Endang M. Septiningsih. 2019. QTL mapping for tolerance to anaerobic germination in rice from IR64 and the aus landrace Kharsu 80A. DOI: doi:10.1270/jsbbs.18159. Note: institution: IRRI Number of accession(s) cited: 1
Mohammad Rafiqul Islam, Glenn Borja Gregorio, Md. Abdus Salam, Bertrand C. Y. Collard, Rakesh Kumar Singh and Lutful Hassan. 2012. Validation of SalTol Linked Markers and Haplotype Diversity on Chromosome 1 of Rice. DOI: doi: 10.5376/mpb.2012.03.0010. Note: institution: IRRI Number of accession(s) cited: 6
Muhammad Ashfaq, Iqra Saleem, Muhammad Saleem Haider, Muhammad Ali, Javed Iqbal Watto, Muhammad Shafiq, Shahbaz Ahmad, Muhammad Asrar, Abdul Rasheed, Umair Ali, Muhammad Sajjad and Urooj Mubashar. 2020. SSR Based Screening of Rice Germplasm Against Blast Disease and its GIS Monitoring in Punjab, Pakistan. DOI: https://www.ijbbku.com/assets/custom/journals/2020/3/SSR%20BASED%20SCREENING%20OF%20RICE%20GERMPLASM%20AGAINST%20BLAST%20DISEASE%20AND%20ITS%20GIS%20MONITORING%20IN%20PUNJAB,%20PAKISTAN.pdf. Note: Couldn't find DOI; institution: Outside IRRI Number of accession(s) cited: 10
Muhua Wang Yeisoo Yu Georg Haberer Pradeep Reddy Marri Chuanzhu Fan Jose Luis Goicoechea Andrea Zuccolo Xiang Song Dave Kudrna Jetty S S Ammiraju Rosa Maria Cossu Carlos Maldonado Jinfeng Chen Seunghee Lee Nick Sisneros Kristi de Baynast Wolfgang Golser Marina Wissotski Woojin Kim Paul Sanchez Marie-Noelle Ndjiondjop Kayode Sanni Manyuan Long Judith Carney Olivier Panaud Thomas Wicker Carlos A Machado Mingsheng Chen Klaus F X Mayer Steve Rounsley Rod A Wing. 2014. The genome sequence of African rice (Oryza glaberrima) and evidence for independent domestication. DOI: doi:10.1038/ng.3044. Note: institution: Outside IRRI Number of accession(s) cited: 2
Nadia Al-Tamimi, Chris Brien, Helena Oakey, Bettina Berger, Stephanie Saade, Yung Shwen Ho, Sandra M. Schm�ckel, Mark Tester and S�nia Negr�o. 2016. Salinity tolerance loci revealed in rice using high-throughput non-invasive phenotyping. DOI: https://doi.org/10.1038/ncomms13342. Note: institution: Outside IRRI Number of accession(s) cited: 552
Nahuel Gonza�lez Schain, Ludovico Dreni, Lovely M.F. Lawas, Massimo Galbiati, Lucia Colombo, Sigrid Heuer, Krishna S.V. Jagadish and Martin M. Kater. 2015. Genome-Wide Transcriptome Analysis During Anthesis Reveals New Insights into the Molecular Basis of Heat Stress Responses in Tolerant and Sensitive Rice Varieties. DOI: DOI: 10.1093/pcp/pcv174. Note: institution: IRRI Number of accession(s) cited: 2
Namrata Singh, Trang T. M. Dang, Georgina V. Vergara, Dev Mani Pandey, Darlene Sanchez, C. N. Neeraja, Endang M. Septiningsih, Merlyn Mendioro, Evelyn Mae Tecson-Mendoza, Abdelbagi M. Ismail, David J. Mackill and Sigrid Heuer. 2010. Molecular marker survey and expression analyses of the rice submergence-tolerance gene SUB1A. DOI: DOI: 10.1007/s00122-010-1400-z. Note: institution: IRRI Number of accession(s) cited: 76
Nurul Hidayatun, Maria Genaleen Q. Diaz and Abdelbagi M. Ismail. 2017. Exploring Aluminum Tolerance at Seedling Stage in Rice (Oryza sativa, Linn) by Using Modified Magnavaca Nutrient Solution. DOI: DOI 10.21082/blpn.v23n2.2017.p81-90. Note: institution: IRRI Number of accession(s) cited: 7
O. Azzam, M. L. M. Yambao, M. Muhsin, K. L. McNally and K. M. L. Umadhay. 2000. Genetic diversity of rice tungro spherical virus in tungro-endemic provinces of the Philippines and Indonesia. DOI: https://doi.org/10.1007/s007050070118. Note: institution: IRRI Number of accession(s) cited: 4
O. Azzam, T. Imbe, R. Ikeda, P.D.Nath and E. Coloquio. 2001. Inheritance of resistance to rice tungro spherical virus in a near-isogenic line derived from Utri Merah and in rice cultivar TKM6. DOI: https://doi.org/10.1023/A:1012605218343. Note: institution: IRRI Number of accession(s) cited: 3
O. Souleymane, E. Nartey, B. Manneh, E. Danquah and K. Ofor. 2015. Phenotypic Variability of 20 Rice Genotypes Under Salt Stress. DOI: DOI: 10.3923/ijpbg.2016.45.51. Note: institution: Outside IRRI Number of accession(s) cited: 9
Olivier Cotsaftis, Darren Plett, Alexander A.T. Johnson, Harkamal Walia, Clyde Wilson, Abdelbagi M. Ismail, Timothy J. Close, Mark Tester and Ute Baumann. 2011. Root-Specific Transcript Profiling of Contrasting Rice Genotypes in Response to Salinity Stress. DOI: https://doi.org/10.1093/mp/ssq056. Note: institution: IRRI Number of accession(s) cited: 2
Onoriode Coast, Richard H. Ellis, Alistair J. Murdoch, Cherryl Qui�ones and Krishna S. V. Jagadish. 2014. High night temperature induces contrasting responses for spikelet fertility, spikelet tissue temperature, flowering characteristics and grain quality in rice. DOI: https://doi.org/10.1071/FP14104. Note: institution: IRRI Number of accession(s) cited: 7
P. Natraj Kumar, K. Sujatha, G. S. Laha, K. Srinivasa Rao, B. Mishra, B. C. Viraktamath, Y. Hari, C. S. Reddy, S. M. Balachandran, T. Ram, M. Sheshu Madhav, N. Shobha Rani, C. N. Neeraja, G. Ashok Reddy, H. Shaik, and R. M. Sundaram. 2012. Identification and fine-mapping of Xa33, a novel gene for resistance to Xanthomonas oryzae pv. Oryza. DOI: https://doi.org/10.1094/PHYTO-03-11-0075. Note: institution: Outside IRRI Number of accession(s) cited: 1
Padmini Swain, Mahender Anumalla, Smita Prusty, Bishnu Charan Marndi and Gundimeda Jwala Narasimha Rao. 2014. Characterization of some Indian native land race rice accessions for drought tolerance at seedling stage. DOI: https://search.informit.org/doi/10.3316/INFORMIT.210804620449882. Note: institution: IRRI Number of accession(s) cited: 73
Parminder S. Virk, Bian V. Ford-Lloyd, Michael T. Jackson, Harpal S. Pooni, Tomas P. Clemenot and H. John Newbury. 1995. Predicting quantitative variation within rice germplasm using molecular markers. DOI: https://doi.org/10.1038/hdy.1996.43. Note: institution: IRRI Number of accession(s) cited: 48
Parminder S. Virk, Brian V. Ford-Lloyd, Michael T. Jackson and H. John Newbury. 1994. Use of RAPD for the study of diversity within plant germplasm collections. DOI: https://doi.org/10.1038/hdy.1995.25. Note: institution: IRRI Number of accession(s) cited: 14
Parviz Fasahati, Sadequr Rahman and Wickneswari Ratnam. 2014. Genetic controls on starch amylose content in wheat and rice grains. DOI: https://doi.org/10.1007/s12041-014-0325-8. Note: institution: Outside IRRI Number of accession(s) cited: 3
Paul Tanger, Stephen Klassen, Julius P. Mojica, John T. Lovell, Brook T. Moyers, Marietta Baraoidan, Maria Elizabeth B. Naredo, Kenneth L. McNally, Jesse Poland, Daniel R. Bush, Hei Leung, Jan E. Leach and John K. McKay. 2017. Field-based high throughput phenotyping rapidly identifies genomic regions controlling yield components in rice. DOI: https://doi.org/10.1038/srep42839. Note: institution: IRRI Number of accession(s) cited: 2
Pradeep Reddy Marri, Sarla N, Laxminarayana V Reddy and EA Siddiq. 2005. Identification and mapping of yield and yield related QTLs from an Indian accession of Oryza rufipogon. DOI: doi:10.1186/1471-2156-6-33. Note: institution: Outside IRRI Number of accession(s) cited: 1
Preetinder S. Sarao, Gurpreet K. Sahi, Kumari Neelam, Gurjit S. Mangat, Bhaskar C. Patra and Kuldeep Singh. 2016. Donors for Resistance to Brown Planthopper Nilaparvata lugens (St�l) from Wild Rice Species. DOI: https://doi.org/10.1016/j.rsci.2016.06.005. Note: institution: Outside IRRI Number of accession(s) cited: 29
Puneet Paul, Balpreet K. Dhatt, Jaspreet Sandhu, Waseem Hussain, Larissa Irvin, Gota Morota, Paul Staswick and Harkamal Walia. 2019. Divergent phenotypic response of rice accessions to transient heat stress during early seed development. DOI: https://doi.org/10.1002/pld3.196. Note: Nine rice accessions from Rice Diversity Panel 1 (RDP1; Zhao et al., 2011) were selected based on their relatively similar flowering time (<120 days) to ensure that the accessions flowered under similar light conditions in the glasshouse; institution: IRRI Number of accession(s) cited: 9
R. K. Aggarwal, D. S. Brar and G. S. Khush. 1997. Two new genomes in the Oryza complex identified on the basis of molecular divergence analysis using total genomic DNA hybridization. DOI: https://doi.org/10.1007/s004380050384. Note: institution: IRRI Number of accession(s) cited: 76
R. K. Aggarwal, D. S. Brar and S. Nandi. 1999. Phylogenetic relationships among Oryza species revealed by AFLP markers. DOI: https://doi.org/10.1007/s001220051198. Note: institution: IRRI Number of accession(s) cited: 73
R. Latha, L. Rubia, J. Bennett and M. S. Swaminathan. 2004. Allele Mining for Stress Tolerance Genes in Oryza Species and Related Germplasm. DOI: https://doi.org/10.1385/mb:27:2:101. Note: institution: IRRI Number of accession(s) cited: 48
Rachana B, Eswari KB, Jyothi B, Lakshmi Devi G, Jai Vidhya LRK, Laxmi Bhavani P, Bharath M, Raghuveer Rao P, Aravind Kumar J, Fiyaz Abdul R, Neeraja CN, Subba Rao LV and T Ram. 2019. Characterization of new plant type core set of rice (Oryza sativa L.) using QTL/gene-linked markers. DOI: DOI:10.35709/ory.2019.56.4.2. Note: institution: Outside IRRI Number of accession(s) cited: 33
Rachana Bagudam, K. B. Eswari, Jyothi Badri, G. Lakshmi Devi, L. R. K. JaiVidhya, P. Bhavani, Gattu Swathi, M. Bharath, P. Raghuveer Rao, Jukanti Aravind Kumar, R. Abdul Fiyaz, C. N. Neeraja, L. V. Subba Rao and T. Ram. 2020. Morphological and molecular characterization of new plant type core set for yield and culm strength traits in rice (Oryza sativa L.). DOI: https://doi.org/10.1007/s13562-020-00581-w. Note: institution: Outside IRRI Number of accession(s) cited: 34
Railson Schreinert dos Santos, Daniel da Rosa Farias, Camila Pegoraro, Cesar Valmor Rombaldi, Takeshi Fukao, Rod A. Wing and Antonio Costa de Oliveira. 2017. Evolutionary analysis of the SUB1 locus across the Oryza genomes. DOI: https://doi.org/10.1186/s12284-016-0140-3. Note: institution: Outside IRRI Number of accession(s) cited: 7
Raj Kumar Niroula, Chiara Pucciariello, Viet The Ho, Giacomo Novi, Takeshi Fukao and Pierdomenico Perata. 2012. SUB1A?dependent and ?independent mechanisms are involved in the flooding tolerance of wild rice species. DOI: https://doi.org/10.1111/j.1365-313X.2012.05078.x. Note: institution: Outside IRRI Number of accession(s) cited: 36
Raju Bheemanahalli, Sherry Hechanova, Jena K. Kshirod and S. V. Krishna Jagadish. 2019. Root anatomical traits of wild-rices reveal links between flooded rice and dryland sorghum. DOI: https://doi.org/10.1007/s40502-019-00451-1. Note: institution: IRRI Number of accession(s) cited: 23
Ratna Karan, Teresa DeLeon, Hanamareddy Biradar and Prasanta K. Subudhi. 2012. Salt Stress Induced Variation in DNA Methylation Pattern and Its Influence on Gene Expression in Contrasting Rice Genotypes. DOI: doi:10.1371/journal.pone.0040203. Note: institution: Outside IRRI Number of accession(s) cited: 3
Reza Mohammadi, Merlys S. Mendioro, Genaleen Q. Diaz, Glenn B. Gregorio and Rakesh K. Singh. 2014. Genetic analysis of salt tolerance at seedling and reproductive stages in rice (Oryza sativa). DOI: doi:10.1111/pbr.12210. Note: institution: IRRI Number of accession(s) cited: 1
Romain Philippe, Brigitte Courtois, Kenneth L. McNally, Pierre Mournet, Redouane El-Malki, Marie Christine Le Paslier, Denis Fabre, Claire Billot, Dominique Brunel, Jean-Christophe Glaszmann and Dominique This. 2010. Structure, allelic diversity and selection of Asr genes, candidate for drought tolerance, in Oryza sativa L. and wild relatives. DOI: https://doi:10.1007/s00122-010-1348-z. Note: institution: IRRI Number of accession(s) cited: 212
Rosa Paula Cuevasa, Robert G. Gilbert and Melissa A. Fitzgeralda. 2010. Structural differences between hot-water-soluble and hot-water-insoluble fractions of starch in waxy rice (Oryza sativa L.). DOI: https://doi.org/10.1016/j.carbpol.2010.03.007. Note: institution: IRRI Number of accession(s) cited: 6
Rosa Paula O. Cuevas, Cyril John Domingo and Nese Sreenivasulu. 2018. Multivariate-based classification of predicting cooking quality ideotypes in rice (Oryza sativa L.) indica germplasm. DOI: https://doi.org/10.1186/s12284-018-0245-y. Note: institution: IRRI Number of accession(s) cited: 167
Rosalyn B. Angeles-Shim, Junghyun Shim, Ricky B. Vinarao, Ruby S. Lapis and Joshua J. Singleton. 2020. A novel locus from the wild allotetraploid rice species Oryza latifolia Desv. confers bacterial blight (Xanthomonas oryzae pv. oryzae) resistance in rice (O. sativa). DOI: https://doi.org/ 10.1371/journal.pone.0229155. Note: institution: IRRI Number of accession(s) cited: 1
Samsad Razzaque, Taslima Haque, Sabrina M. Elias, Md. Sazzadur Rahman, Sudip Biswas, Scott Schwartz, Abdelbagi M. Ismail, Harkamal Walia, Thomas E. Juenger and Zeba I. Seraj. 2017. Reproductive stage physiological and transcriptional responses to salinity stress in reciprocal populations derived from tolerant (Horkuch) and susceptible (IR29) rice. DOI: https://doi.org/10.1038/srep46138. Note: institution: IRRI Number of accession(s) cited: 2
Sancho G. Bon, Teresita H. Borromeo, Nestor C. Altoveros and Avelino D. Raymundo. 2006. Isozyme Characterization and Diversity Among the Philippine Populations of Oryza officinalis Wall ex. Watt conserved ex situ. DOI: https://philjournalsci.dost.gov.ph/images/pdf/pjs_pdf/vol135no2/pdf/Isozyme_characterization_and_diversity_among_the_Philippine_populations_of_Oryza_officinalis.pdf. Note: Couldn't find DOI; institution: Outside IRRI Number of accession(s) cited: 32
Seif Gasim, Ishraka Abuanja and Abdel-Wahab Abdalla. 2018. Genetic diversity of rice (Oryza sativa L.) accessions collected from Sudan and IRRI using SSR markers. DOI: DOI: 10.5897/AJAR2018.13554. Note: 13 accns were mentioned but only 6 accns were idetified through GRIMS. There's only one record of Mazhan on GRIMS, but the word RED is not included (IRGC 97028). IRGC 122403 (IRRI 154). IRGC 15800 (ERATIO). IRGC 49592 (DAWE). IRGC 88335 ( KHAO HLAN ON). IRGC 135888 (FL 478).; institution: Outside IRRI Number of accession(s) cited: 6
Shahid Masood Shah, Muhammad Arif, Kashif Aslam, Ghulam Shabir and Michael J. Thomson. 2015. Genetic diversity analysis of Pakistan rice (Oryza sativa) germplasm using multiplexed single nucleotide polymorphism markers. DOI: DOI 10.1007/s10722-015-0304-9. Note: institution: IRRI Number of accession(s) cited: 2
Sherry Lou Hechanova, Manas R. Prusty, Sung?Ryul Kim, LaRue Ballesfin, Joie Ramos, G. D. Prahalada and Kshirod K. Jena. 2018. Monosomic alien addition lines (MAALs) of Oryza rhizomatis in Oryza sativa: production, cytology, alien trait introgression, molecular analysis and breeding application. DOI: https://doi.org/10.1007/s00122-018-3147-x. Note: institution: IRRI Number of accession(s) cited: 1
S�nia Negr�o, M. Cec�lia Almadanim, In�s S. Pires, Isabel A. Abreu, Jo�o Maroco, Brigitte Courtois, Glenn B. Gregorio, Kenneth L. McNally and M. Margarida Oliveira. 2012. New allelic variants found in key rice salt?tolerance genes: an association study. DOI: https://doi.org/10.1111/pbi.12010. Note: institution: IRRI Number of accession(s) cited: 381
Srinivasachary, G. Beligan, L. Willocquet and S. Savary. 2013. A strategy to identify sources of quantitative resistance in pathosystems involving disease escape and physiological resistance: the case study of rice sheath blight. DOI: Doi: 10.1111/j.1365-3059.2012.02695.x. Note: institution: IRRI Number of accession(s) cited: 157
Sriprapai Chakhonkaen, Keasinee Pitnjam, Wachira Saisuk, Kittipat Ukoskit and Amorntip Muangprom. 2012. Genetic structure of Thai rice and rice accessions obtained from the International Rice Research Institute. DOI: https://doi.org/10.1186/1939-8433-5-19. Note: institution: Outside IRRI Number of accession(s) cited: 55
Stefan Reuscher, Tomoyuki Furuta, Kanako Bessho-Uehara, Michele Cosi, Kshirod K. Jena, Atsushi Toyoda, Asao Fujiyama, Nori Kurata and Motoyuki Ashikari. 2018. Assembling the genome of the African wild rice Oryza longistaminata by exploiting synteny in closely related Oryza species. DOI: DOI: 10.1038/s42003-018-0171-y. Note: institution: IRRI Number of accession(s) cited: 1
Stephen E. Timple and Fiona R. Hay. 2018. High-temperature drying of seeds of wild Oryza species intended for long-term storage. DOI: https://doi.org/10.15258/sst.2018.46.1.10. Note: institution: IRRI Number of accession(s) cited: 4
Stephen E. Timple, Fiona R. Hay, Ma. Fatima O. Mercado, Teresita H. Borromeo and Pompe C. Sta. Cruz. 2018. Response of intact seeds of wild rice (Oryza) species to dry heat treatment and dormancy-breaking chemicals. DOI: https://doi.org/10.15258/sst.2018.46.1.16. Note: institution: IRRI Number of accession(s) cited: 15
Suk-Man Kim and Russell F. Reinke. 2019. A novel resistance gene for bacterial blight in rice, Xa43(t) identified by GWAS, confirmed by QTL mapping using a bi-parental population. DOI: https://doi.org/10.1371/journal. pone.0211775. Note: institution: IRRI Number of accession(s) cited: 1
Susan R. McCouch, Megan Sweeney, Jiming Li, Hui Jiang, Michael Thomson, Endang Septiningsih, Jeremy Edwards, Pilar Moncada, Jinhua Xiao, Amanda Garris, Tom Tai, Cesar Martinez, Joe Tohme, Sugiono, Anna McClung, Long Ping Yuan and Sang-Nag Ahn. 2006. Through the genetic bottleneck: O. rufipogon as a source of trait-enhancing alleles for O. sativa. DOI: DOI 10.1007/s10681-006-9210-8. Note: institution: IRRI Number of accession(s) cited: 1
Syed Mehar Ali Shah, Hidayat-Ur-Rahman, Fida Muhammad Abbasi, Malik Ashiq Rabbani, Ijaz Ahmad Khan, Zabta Khan Shinwari and Zahir Shah. 2015. Interspecific Variation of Total Seed Protein in Wild Rice Germplasm Using SDS-PAGE. DOI: https://www.researchgate.net/publication/272828365_Interspecific_variation_of_total_seed_protein_in_wild_rice_germplasm_using_SDS-PAGE. Note: institution: Outside IRRI Number of accession(s) cited: 14
Teresa B. De Leon, Steven Linscombe, Glenn Gregorio and Prasanta K. Subudhi. 2015. Genetic variation in Southern USA rice genotypes for seedling salinity tolerance. DOI: doi: 10.3389/fpls.2015.00374. Note: institution: IRRI Number of accession(s) cited: 9
Teresita H. Borromeo. 2000. Philippine Wild Rices: Diverse and Disappearing. DOI: https://www.researchgate.net/publication/297192710_Philippine_wild_rices_Diverse_and_disappearing. Note: Couldn't find DOI; institution: Outside IRRI Number of accession(s) cited: 40
Thomas Degenkolbe, Phuc Thi Do, Ellen Zuther, Dirk Repsilber, Dirk Walther, Dirk K. Hincha and Karin I. Kohl. 2008. Expression profiling of rice cultivars differing in their tolerance to long-term drought stress. DOI: DOI 10.1007/s11103-008-9412-7. Note: institution: Outside IRRI Number of accession(s) cited: 3
Tomoyuki Furuta, Motoyuki Ashikari, Kshirod K. Jena, Kazuyuki Doi and Stefan Reuscher. 2017. Adapting genotyping-by-sequencing for rice F2 populations. DOI: https://doi.org/10.1534/g3.116.038190. Note: institution: IRRI Number of accession(s) cited: 1
Victoria C. Lapitan, Edilberto D. Redo�a, Toshinori Abe, and Darshan S. Brar. 2009. Mapping of Quantitative Trait Loci Using a Doubled-Haploid Population from the Cross of Indica and Japonica Cultivars of Rice. DOI: DOI: 10.2135/cropsci2008.11.0655. Note: institution: IRRI Number of accession(s) cited: 2
Vishnu Varthini Nachimuthu, Raveendran Muthurajan, Sudhakar Duraialaguraja, Rajeswari Sivakami, Balaji Aravindhan Pandian, Govinthraj Ponniah, Karthika Gunasekaran, Manonmani Swaminathan, Suji K K and Robin Sabariappan. 2015. Analysis of Population Structure and Genetic Diversity in Rice Germplasm Using SSR Markers: An Initiative Towards Association Mapping of Agronomic Traits in Oryza Sativa. DOI: DOI 10.1186/s12284-015-0062-5. Note: institution: IRRI Number of accession(s) cited: 22
Wei Qian, Song Ge and De-yuan Hong. 2004. Genetic diversity in accessions of wild rice Oryza granulata from South and Southeast Asia. DOI: DOI 10.1007/s10722-004-6691-y. Note: institution: Outside IRRI Number of accession(s) cited: 19
Xianjin Qiu, Yunlong Pang, Zhihua Yuan, Danying Xing, Jianlong Xu, Michael Dingkuhn, Zhikang Li and Guoyou Ye. 2015. Genome-Wide Association Study of Grain Appearance and Milling Quality in a Worldwide Collection of Indica Rice Germplasm. DOI: https://doi.org/10.1371/journal.pone.0145577. Note: institution: IRRI Number of accession(s) cited: 272
Xinyou Yin, Martin J. Kropff and Jan Goudriaan. 1996. Differential Effects of Day and Night Temperature on Development to Flowering in Rice. DOI: https://doi.org/10.1006/anbo.1996.0024. Note: institution: IRRI Number of accession(s) cited: 19
Y. Gong, T. Borromeo and B.-R. Lu. 2000. A biosystematic study of the Oryza meyeriana complex (Poaceae). DOI: http://dx.doi.org/10.1007/BF00986339. Note: institution: IRRI Number of accession(s) cited: 4
Yang Wang, Weihua Jiang, Hongmei Liu, Ya Zeng, Bo Du, Lili Zhu, Guangcun He and Rongzhi Chen. 2017. Marker assisted pyramiding of Bph6 and Bph9 into elite restorer line 93�11 and development of functional marker for Bph9. DOI: DOI 10.1186/s12284-017-0194-x. Note: institution: Outside IRRI Number of accession(s) cited: 5
Yibo Li, Chuchuan Fan, Yongzhong Xing, Yunhe Jiang, Lijun Luo, Liang Sun, Di Shao, Chunjue Xu, Xianghua Li, Jinghua Xiao, Yuqing He amd Qifa Zhang. 2011. Natural variation in GS5 plays an important role in regulating grain size and yield in rice. DOI: doi:10.1038/ng.977. Note: institution: Outside IRRI Number of accession(s) cited: 1
Yibo Li, Chuchuan Fan, Yongzhong Xing, Yunhe Jiang, Lijun Luo, Liang Sun, Di Shao, Chunjue Xu, Xianghua Li, Jinghua Xiao, Yuqing He and Qifa Zhang. 2011. Natural variation in GS5 plays an important role in regulating grain size and yield in rice. DOI: doi:10.1038/ng.977. Note: institution: Outside IRRI Number of accession(s) cited: 14
Yong Zhou, Dmytro Chebotarov, Dave Kudrna, Victor Llaca, Seunghee Lee, Shanmugam Rajasekar, Nahed Mohammed, Noor Al-Bader, Chandler Sobel-Sorenson, Praveena Parakkal, Lady Johanna Arbelaez, Natalia Franco, Nickolai Alexandrov, N. Ruaraidh Sackville Hamilton, Hei Leung, Ramil Mauleon, Mathias Lorieux, Andrea Zuccolo, Kenneth McNally, Jianwei Zhang and Rod A. Wing. 2020. A platinum standard pan-genome resource that represents the population structure of Asian rice. DOI: https://doi.org/10.1038/s41597-020-0438-2. Note: institution: IRRI Number of accession(s) cited: 10
Yoo-Jin Lee, Michael J. Thomson and Joong Hyoun Chin. 2014. Application of indica�japonica singlenucleotide polymorphism markers for diversity analysis of Oryza AA genome species. DOI: doi:10.1017/S1479262114000215. Note: institution: IRRI Number of accession(s) cited: 82
Yoshitaka Kanaoka, Daichi Kuniyoshi, Eri Inada, Yohei Koide, Yoshihiro Okamoto, Hideshi Yasui and Yuji Kishima. 2018. Anther culture in rice proportionally rescues microspores according to gametophytic gene efect and enhances genetic study of hybrid sterility. DOI: https://doi.org/10.1186/s13007-018-0370-z. Note: institution: Outside IRRI Number of accession(s) cited: 2
Yuji Shibata, Rogelio C. Cabunagan, Pepito Q. Cabauatan and Il-Ryong Choi. 2007. Characterization of Oryza rufipogon�Derived Resistance to Tungro Disease in Rice. DOI: DOI: 10.1094/PDIS-91-11-1386. Note: institution: IRRI Number of accession(s) cited: 1
Yunbi Xu, Dominique This, Roman C. Pausch, Wendy M. Vonhof, Jason R. Coburn, Jonathan P. Comstock and Susan R. McCouch. 2009. Leaf-level water use efficiency determined by carbon isotope discrimination in rice seedlings: genetic variation associated with population structure and QTL mapping.. DOI: https://doi.org/10.1007/s00122-009-0963-z. Note: institution: Outside IRRI Number of accession(s) cited: 64
Yusaku Uga, Yoshimichi Fukuta, Ryo Ohsawa and Tatsuhito Fujimura. 2003. Variations of Floral Traits in Asian Cultivated Rice (Oryza sativa L.) and its Wild Relatives (O. rufipogon Griff). DOI: https://doi.org/10.1270/jsbbs.53.345. Note: institution: IRRI Number of accession(s) cited: 179
Z.W. Ranga, S.V.K. Jagadish, Q.M. Zhou, P.Q. Craufurd and S. Heuer. 2011. Effect of high temperature and water stress on pollen germination and spikelet fertility in rice. DOI: https://doi.org/10.1016/j.envexpbot.2010.08.009. Note: institution: IRRI Number of accession(s) cited: 5

Accession

IPR

Pedigree